Related references
Note: Only part of the references are listed.GMrepo: a database of curated and consistently annotated human gut metagenomes
Sicheng Wu et al.
NUCLEIC ACIDS RESEARCH (2020)
Effects of a multispecies synbiotic on glucose metabolism, lipid marker, gut microbiome composition, gut permeability, and quality of life in diabesity: a randomized, double-blind, placebo-controlled pilot study
Angela Horvath et al.
EUROPEAN JOURNAL OF NUTRITION (2020)
The effects of synbiotic supplementation on thyroid function and inflammation in hypothyroid patients: A randomized, double-blind, placebo-controlled trial
Sepide Talebi et al.
COMPLEMENTARY THERAPIES IN MEDICINE (2020)
Fermented foods in a global age: East meets West
Jyoti Prakash Tamang et al.
COMPREHENSIVE REVIEWS IN FOOD SCIENCE AND FOOD SAFETY (2020)
Fermented foods, the gut and mental health: a mechanistic overview with implications for depression and anxiety
Hajara Aslam et al.
NUTRITIONAL NEUROSCIENCE (2020)
Phytase producing lactic acid bacteria: Cell factories for enhancing micronutrient bioavailability of phytate rich foods
Neha Sharma et al.
TRENDS IN FOOD SCIENCE & TECHNOLOGY (2020)
Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome
Edoardo Pasolli et al.
NATURE COMMUNICATIONS (2020)
Consumption of Fermented Foods Is Associated with Systematic Differences in the Gut Microbiome and Metabolome
Bryn C. Taylor et al.
MSYSTEMS (2020)
Effect of probiotic and prebiotic vs placebo on psychological outcomes in patients with major depressive disorder: A randomized clinical trial
Asma Kazemi et al.
CLINICAL NUTRITION (2019)
Influence of 4-week multi-strain probiotic administration on resting-state functional connectivity in healthy volunteers
Deepika Bagga et al.
EUROPEAN JOURNAL OF NUTRITION (2019)
Clinical and Microbiological Effect of a Multispecies Probiotic Supplementation in Celiac Patients With Persistent IBS-type Symptoms A Randomized, Double-Blind, Placebo-controlled, Multicenter Trial
Ruggiero Francavilla et al.
JOURNAL OF CLINICAL GASTROENTEROLOGY (2019)
Biotechnology of health-promoting bacteria
Francois P. Douillard et al.
BIOTECHNOLOGY ADVANCES (2019)
Inventory of microbial species with a rationale: a comparison of the IDF/EFFCA inventory of microbial food cultures with the EFSA Biohazard Panel qualified presumption of safety
F. Bourdichon et al.
FEMS MICROBIOLOGY LETTERS (2019)
A new genomic blueprint of the human gut microbiota
Alexandre Almeida et al.
NATURE (2019)
New insights from uncultivated genomes of the global human gut microbiome
Stephen Nayfach et al.
NATURE (2019)
Interactions Between Food and Gut Microbiota: Impact on Human Health
Yanbei Wu et al.
ANNUAL REVIEW OF FOOD SCIENCE AND TECHNOLOGY, VOL 10 (2019)
Comparative Genome Analysis of Lactococcus lactis Indicates Niche Adaptation and Resolves Genotype/Phenotype Disparity
Michiel Wels et al.
FRONTIERS IN MICROBIOLOGY (2019)
Probiotic potential of a Lactobacillus rhamnosus cheese isolate and its effect on the fecal microbiota of healthy volunteers
Joaquin Bautista-Gallego et al.
FOOD RESEARCH INTERNATIONAL (2019)
Effects of Lactobacillus plantarum PS128 on Children with Autism Spectrum Disorder in Taiwan: A Randomized, Double-Blind, Placebo-Controlled Trial
Yen-Wenn Liu et al.
NUTRIENTS (2019)
Effects of Bifidobacterium longum and Lactobacillus rhamnosus on Gut Microbiota in Patients with Lactose Intolerance and Persisting Functional Gastrointestinal Symptoms: A Randomised, Double-Blind, Cross-Over Study
Paola Vitellio et al.
NUTRIENTS (2019)
Probiotic Lactobacillus casei: Effective for Managing Childhood Diarrhea by Altering Gut Microbiota and Attenuating Fecal Inflammatory Markers
Hung-Hsiang Lai et al.
NUTRIENTS (2019)
Fermented Dairy Foods: Impact on Intestinal Microbiota and Health-Linked Biomarkers
S. Gonzalez et al.
FRONTIERS IN MICROBIOLOGY (2019)
Microbiome Learning Repo (ML Repo): A public repository of microbiome regression and classification tasks
Pajau Vangay et al.
GIGASCIENCE (2019)
Effect of Daily Intake of Lactobacillus casei on Microbial Diversity and Dynamics in a Healthy Pediatric Population
Sofia el Manouni el Hassani et al.
CURRENT MICROBIOLOGY (2019)
Gut feelings: A randomised, triple-blind, placebo-controlled trial of probiotics for depressive symptoms
Bahia Chahwan et al.
JOURNAL OF AFFECTIVE DISORDERS (2019)
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
Evan Bolyen et al.
NATURE BIOTECHNOLOGY (2019)
Probiotics and prebiotics in intestinal health and disease: from biology to the clinic
Mary Ellen Sanders et al.
NATURE REVIEWS GASTROENTEROLOGY & HEPATOLOGY (2019)
Fasting breath H2 and gut microbiota metabolic potential are associated with the response to a fermented milk product in irritable bowel syndrome
Boris Le Neve et al.
PLOS ONE (2019)
The potential impact of the Lactobacillus name change: The results of an expert meeting organised by the Lactic Acid Bacteria Industrial Platform (LABIP)
Bruno Pot et al.
TRENDS IN FOOD SCIENCE & TECHNOLOGY (2019)
MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
Dongwan D. Kang et al.
PEERJ (2019)
Soluble fibre supplementation with and without a probiotic in adults with asthma: A 7-day randomised, double blind, three way cross-over trial
Rebecca McLoughlin et al.
EBIOMEDICINE (2019)
DAIRYdb: a manually curated reference database for improved taxonomy annotation of 16S rRNA gene sequences from dairy products
Marco Meola et al.
BMC GENOMICS (2019)
Consumption of a Leuconostoc holzapfelii-enriched synbiotic beverage alters the composition of the microbiota and microbial extracellular vesicles
Jinho Yang et al.
EXPERIMENTAL AND MOLECULAR MEDICINE (2019)
Advancing integration of data on food microbiome studies: FoodMicrobionet 3.1, a major upgrade of the FoodMicrobionet database
Eugenio Parente et al.
INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY (2019)
Establishing What Constitutes a Healthy Human Gut Microbiome: State of the Science, Regulatory Considerations, and Future Directions
Michael I. McBurney et al.
JOURNAL OF NUTRITION (2019)
Compendium of 4,941 rumen metagenome-assembled genomes for rumen microbiome biology and enzyme discovery
Robert D. Stewart et al.
NATURE BIOTECHNOLOGY (2019)
Accurate and Strict Identification of Probiotic Species Based on Coverage of Whole-Metagenome Shotgun Sequencing Data
Donghyeok Seol et al.
FRONTIERS IN MICROBIOLOGY (2019)
Health Benefits of Lactobacillus gasseri CP2305 Tablets in Young Adults Exposed to Chronic Stress: A Randomized, Double-Blind, Placebo-Controlled Study
Kensei Nishida et al.
NUTRIENTS (2019)
Fermented Foods: Definitions and Characteristics, Impact on the Gut Microbiota and Effects on Gastrointestinal Health and Disease
Eirini Dimidi et al.
NUTRIENTS (2019)
HMP16SData: Efficient Access to the Human Microbiome Project Through Bioconductor
Lucas Schiffer et al.
AMERICAN JOURNAL OF EPIDEMIOLOGY (2019)
Towards a Genome-Based Reclassification of the Genus Lactobacillus
Stijn Wittouck et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2019)
A Diverse Repertoire of Exopolysaccharide Biosynthesis Gene Clusters in Lactobacillus Revealed by Comparative Analysis in 106 Sequenced Genomes
Dipti Deo et al.
MICROORGANISMS (2019)
Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle
Edoardo Pasolli et al.
CELL (2019)
Symposium review: Genomic investigations of flavor formation by dairy microbiota
Olivia McAuliffe et al.
JOURNAL OF DAIRY SCIENCE (2019)
Fermentation-enabled wellness foods: A fresh perspective
Huan Xiang et al.
FOOD SCIENCE AND HUMAN WELLNESS (2019)
The impact of raw fermented milk products on perceived health and mood among Dutch adults
Ton Baars et al.
NUTRITION & FOOD SCIENCE (2019)
Biogenic Amine Production by Lactic Acid Bacteria: A Review
Federica Barbieri et al.
FOODS (2019)
Probiotic and synbiotic supplementation could improve metabolic syndrome in prediabetic adults: A randomized controlled trial
Nazila Kassaian et al.
DIABETES & METABOLIC SYNDROME-CLINICAL RESEARCH & REVIEWS (2019)
Microbial communities in a dynamic in vitro model for the human ileum resemble the human ileal microbiota
Maria Stolaki et al.
FEMS MICROBIOLOGY ECOLOGY (2019)
The effect of multistrain probiotic supplementation in two doses on iron metabolism in obese postmenopausal women: a randomized trial
Katarzyna Skrypnik et al.
FOOD & FUNCTION (2019)
The Effects of Synbiotic Supplementation on Body Mass Index, Metabolic and Inflammatory Biomarkers, and Appetite in Patients with Metabolic Syndrome: A Triple-Blind Randomized Controlled Trial
Samira Rabiei et al.
JOURNAL OF DIETARY SUPPLEMENTS (2019)
Diet-derived microbial metabolites in health and disease
H. M. Roager et al.
NUTRITION BULLETIN (2019)
Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species
Serena Manara et al.
GENOME BIOLOGY (2019)
Health benefits of fermented foods
Nevin Sanlier et al.
CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION (2019)
Stress matters: Randomized controlled trial on the effect of probiotics on neurocognition
S. Papalini et al.
NEUROBIOLOGY OF STRESS (2019)
Effect of Lactobacillus paracasei CNCM I-1572 on symptoms, gut microbiota, short chain fatty acids, and immune activation in patients with irritable bowel syndrome: A pilot randomized clinical trial
Cesare Cremon et al.
UNITED EUROPEAN GASTROENTEROLOGY JOURNAL (2018)
Effect of administration of a probiotic preparation on gut microbiota and immune response in healthy women in India: an open-label, single-arm pilot study
Ankita Singh et al.
BMC GASTROENTEROLOGY (2018)
Intestinal Lactobacillus in health and disease, a driver or just along for the ride?
Dustin D. Heeney et al.
CURRENT OPINION IN BIOTECHNOLOGY (2018)
Shared mechanisms among probiotic taxa: implications for general probiotic claims
Mary Ellen Sanders et al.
CURRENT OPINION IN BIOTECHNOLOGY (2018)
Functions and emerging applications of bacteriocins
Michael L. Chikindas et al.
CURRENT OPINION IN BIOTECHNOLOGY (2018)
The effects of synbiotic supplementation on insulin resistance/sensitivity, lipid profile and total antioxidant capacity in women with gestational diabetes mellitus: A randomized double blind placebo controlled clinical trial
Zohoor Nabhani et al.
DIABETES RESEARCH AND CLINICAL PRACTICE (2018)
Human gut microbiome: hopes, threats and promises
Patrice D. Cani
GUT (2018)
Dietary Interventions to Modulate the Gut Microbiome-How Far Away Are We From Precision Medicine
Francesca De Filippis et al.
INFLAMMATORY BOWEL DISEASES (2018)
Effect of Lactobacillus rhamnosus GG Supplementation on Intestinal Inflammation Assessed by PET/MRI Scans and Gut Microbiota Composition in HIV-Infected Individuals
Caroline J. Arnbjerg et al.
JAIDS-JOURNAL OF ACQUIRED IMMUNE DEFICIENCY SYNDROMES (2018)
A mixture of Lactobacillus species isolated from traditional fermented foods promote recovery from antibiotic-induced intestinal disruption in mice
Y. Shi et al.
JOURNAL OF APPLIED MICROBIOLOGY (2018)
A Multi-strain Probiotic Reduces the Fatty Liver Index, Cytokines and Aminotransferase levels in NAFLD Patients: Evidence from a Randomized Clinical Trial
Nazarii Kobyliak et al.
JOURNAL OF GASTROINTESTINAL AND LIVER DISEASES (2018)
Lactobacillus reuteri reduces bone loss in older women with low bone mineral density: a randomized, placebo-controlled, double-blind, clinical trial
A. G. Nilsson et al.
JOURNAL OF INTERNAL MEDICINE (2018)
Crying Time and ROR gamma/FOXP3 Expression in Lactobacillus reuteri DSM17938-Treated Infants with Colic: A Randomized Trial
Francesco Savino et al.
JOURNAL OF PEDIATRICS (2018)
Probiotic Supplementation in Chronic Kidney Disease: A Double-blind, Randomized, Placebo-controlled Trial
Natalia A. Borges et al.
JOURNAL OF RENAL NUTRITION (2018)
Postbiotics: An evolving term within the functional foods field
J. E. Aguilar-Toala et al.
TRENDS IN FOOD SCIENCE & TECHNOLOGY (2018)
Recent Past, Present, and Future of the Food Microbiome
Francesca De Filippis et al.
ANNUAL REVIEW OF FOOD SCIENCE AND TECHNOLOGY, VOL 9 (2018)
Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen
Robert D. Stewart et al.
NATURE COMMUNICATIONS (2018)
Anti-inflammatory effects of heat-killed Lactobacillus plantarum L-137 on cardiac and adipose tissue in rats with metabolic syndrome
Ayako Uchinaka et al.
SCIENTIFIC REPORTS (2018)
Modulatory effect of three probiotic strains on infants' gut microbial composition and immunological parameters on a placebo-controlled, double-blind, randomised study
J. De Andres et al.
BENEFICIAL MICROBES (2018)
Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy
Christian M. K. Sieber et al.
NATURE MICROBIOLOGY (2018)
On the Road to Strain-Resolved Comparative Metagenomics
Nicola Segata
MSYSTEMS (2018)
How to select a probiotic? A review and update of methods and criteria
Gilberto Vinicius de Melo Pereira et al.
BIOTECHNOLOGY ADVANCES (2018)
Post-Antibiotic Gut Mucosal Microbiome Reconstitution Is Impaired by Probiotics and Improved by Autologous FMT
Jotham Suez et al.
CELL (2018)
Personalized Gut Mucosal Colonization Resistance to Empiric Probiotics Is Associated with Unique Host and Microbiome Features
Niv Zmora et al.
CELL (2018)
Probiotic Supplementation in Patients with Alzheimer's Dementia - An Explorative Intervention Study
Friedrich Leblhuber et al.
CURRENT ALZHEIMER RESEARCH (2018)
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
Donovan H. Parks et al.
NATURE BIOTECHNOLOGY (2018)
Qiita: rapid, web-enabled microbiome meta-analysis
Antonio Gonzalez et al.
NATURE METHODS (2018)
Novel perspectives on fermented milks and cardiometabolic health with a focus on type 2 diabetes
Melissa Anne Fernandez et al.
NUTRITION REVIEWS (2018)
Lacto- fermented sauerkraut improves symptoms in IBS patients independent of product pasteurisation - a pilot study
Elsa Sandberg Nielsen et al.
FOOD & FUNCTION (2018)
The human gut pan-microbiome presents a compositional core formed by discrete phylogenetic units
Daniel Aguirre de Carcer
SCIENTIFIC REPORTS (2018)
Fermented Foods as a Dietary Source of Live Organisms
Shannon Rezac et al.
FRONTIERS IN MICROBIOLOGY (2018)
US Immigration Westernizes the Human Gut Microbiome
Pajau Vangay et al.
CELL (2018)
Lactobacillus plantarum 299v Supplementation Improves Vascular Endothelial Function and Reduces Inflammatory Biomarkers in Men With Stable Coronary Artery Disease
Mobin Malik et al.
CIRCULATION RESEARCH (2018)
Species-level functional profiling of metagenomes and metatranscriptomes
Eric A. Franzosa et al.
NATURE METHODS (2018)
Yogurt and other fermented foods as sources of health-promoting bacteria
Car Reen Kok et al.
NUTRITION REVIEWS (2018)
Interactions of Surface Exopolysaccharides From Bifidobacterium and Lactobacillus Within the Intestinal Environment
Nuria Castro-Bravo et al.
FRONTIERS IN MICROBIOLOGY (2018)
Occurrence and Dynamism of Lactic Acid Bacteria in Distinct Ecological Niches: A Multifaceted Functional Health Perspective
Fanny George et al.
FRONTIERS IN MICROBIOLOGY (2018)
Fermented Foods and Beverages in Human Diet and Their Influence on Gut Microbiota and Health
Nelson Mota de Carvalho et al.
FERMENTATION-BASEL (2018)
Probiotic supplementation increases obesity with no detectable effects on liver fat or gut microbiota in obese Hispanic adolescents: a 16-week, randomized, placebo-controlled trial
R. B. Jones et al.
PEDIATRIC OBESITY (2018)
Effect of alive probiotic on insulin resistance in type 2 diabetes patients: Randomized clinical trial
Nazarii Kobyliak et al.
DIABETES & METABOLIC SYNDROME-CLINICAL RESEARCH & REVIEWS (2018)
One Health, Fermented Foods, and Gut Microbiota
Victoria Bell et al.
FOODS (2018)
Lactobacillus plantarum HAC01 regulates gut microbiota and adipose tissue accumulation in a diet-induced obesity murine model
Soyoung Park et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2017)
Effect of multi-strain probiotics (multi-strain microbial cell preparation) on glycemic control and other diabetes-related outcomes in people with type 2 diabetes: a randomized controlled trial
Somayyeh Firouzi et al.
EUROPEAN JOURNAL OF NUTRITION (2017)
Metagenomics insights into food fermentations
Francesca De Filippis et al.
MICROBIAL BIOTECHNOLOGY (2017)
Microbial strain-level population structure and genetic diversity from metagenomes
Duy Tin Truong et al.
GENOME RESEARCH (2017)
metaSPAdes: a new versatile metagenomic assembler
Sergey Nurk et al.
GENOME RESEARCH (2017)
Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies
Seok-Hwan Yoon et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2017)
Characterization of the angiotensin-converting enzyme inhibitory activity of fermented milks produced with Lactobacillus casei
Changkun Li et al.
JOURNAL OF DAIRY SCIENCE (2017)
Alterations of gut microbiota in patients with irritable bowel syndrome: A systematic review and meta-analysis
Xiaojun Zhuang et al.
JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY (2017)
A communal catalogue reveals Earth's multiscale microbial diversity
Luke R. Thompson et al.
NATURE (2017)
A randomized synbiotic trial to prevent sepsis among infants in rural India
Pinaki Panigrahi et al.
NATURE (2017)
Shotgun metagenomics, from sampling to analysis
Christopher Quince et al.
NATURE BIOTECHNOLOGY (2017)
Accessible, curated metagenomic data through ExperimentHub
Edoardo Pasolli et al.
NATURE METHODS (2017)
Meta-analysis of gut microbiome studies identifies disease-specific and shared responses
Claire Duvallet et al.
NATURE COMMUNICATIONS (2017)
Impact of High-Dose Multi-Strain Probiotic Supplementation on Neurocognitive Performance and Central Nervous System Immune Activation of HIV-1 Infected Individuals
Giancarlo Ceccarelli et al.
NUTRIENTS (2017)
Preventive Effect of Cow's Milk Fermented with Lactobacillus paracasei CBA L74 on Common Infectious Diseases in Children: A Multicenter Randomized Controlled Trial
Giovanni Corsello et al.
NUTRIENTS (2017)
Lactic Acid Bacteria and Bifidobacteria with Potential to Design Natural Biofunctional Health-Promoting Dairy Foods
Daniel M. Linares et al.
FRONTIERS IN MICROBIOLOGY (2017)
Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life
Donovan H. Parks et al.
NATURE MICROBIOLOGY (2017)
Large-Scale Phylogenomics of the Lactobacillus casei Group Highlights Taxonomic Inconsistencies and Reveals Novel Clade-Associated Features
Sander Wuyts et al.
MSYSTEMS (2017)
16S rRNA gene sequencing and healthy reference ranges for 28 clinically relevant microbial taxa from the human gut microbiome
Daniel E. Almonacid et al.
PLOS ONE (2017)
metaSNV: A tool for metagenomic strain level analysis
Paul Igor Costea et al.
PLOS ONE (2017)
An in vivo assessment of the cholesterol-lowering efficacy of Lactobacillus plantarum ECGC 13110402 in normal to mildly hypercholesterolaemic adults
Adele Costabile et al.
PLOS ONE (2017)
Impact of Lactobacillus reuteri colonization on gut microbiota, inflammation, and crying time in infant colic
Monica L. Nation et al.
SCIENTIFIC REPORTS (2017)
DESMAN: a new tool for de novo extraction of strains from metagenomes
Christopher Quince et al.
GENOME BIOLOGY (2017)
Inflammation, Antibiotics, and Diet as Environmental Stressors of the Gut Microbiome in Pediatric Crohn's Disease (vol 18, pg 489, 2015)
James D. Lewis et al.
CELL HOST & MICROBE (2017)
Lifestyles in transition: evolution and natural history of the genus Lactobacillus
Rebbeca M. Duar et al.
FEMS MICROBIOLOGY REVIEWS (2017)
Experimental Evaluation of Host Adaptation of Lactobacillus reuteri to Different Vertebrate Species
Rebbeca M. Duar et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2017)
Metabolic effects of Lactobacillus reuteri DSM 17938 in people with type 2 diabetes: A randomized controlled trial
Reza Mobini et al.
DIABETES OBESITY & METABOLISM (2017)
Health benefits of fermented foods: microbiota and beyond
Maria L. Marco et al.
CURRENT OPINION IN BIOTECHNOLOGY (2017)
Altered molecular signature of intestinal microbiota in irritable bowel syndrome patients compared with healthy controls: A systematic review and meta-analysis
Hai-Ning Liu et al.
DIGESTIVE AND LIVER DISEASE (2017)
Clinical application of probiotics in type 2 diabetes mellitus: A randomized, double-blind, placebo-controlled study
Livia Bordalo Tonucci et al.
CLINICAL NUTRITION (2017)
The Effectiveness of Lactobacillus Beverages in Controlling Infections among the Residents of an Aged Care Facility: A Randomized Placebo-Controlled Double-Blind Trial
Satoru Nagata et al.
ANNALS OF NUTRITION AND METABOLISM (2016)
Production, properties, and industrial food application of lactic acid bacteria-derived exopolysaccharides
Emanuele Zannini et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2016)
Dairy product consumption and risk of type 2 diabetes in an elderly Spanish Mediterranean population at high cardiovascular risk
Andres Diaz-Lopez et al.
EUROPEAN JOURNAL OF NUTRITION (2016)
Lactobacillus rhamnosus GG-supplemented formula expands butyrate-producing bacterial strains in food allergic infants
Roberto Berni Canani et al.
ISME JOURNAL (2016)
Assembly: a resource for assembled genomes at NCBI
Paul A. Kitts et al.
NUCLEIC ACIDS RESEARCH (2016)
Randomised clinical trial: low-FODMAP rye bread vs. regular rye bread to relieve the symptoms of irritable bowel syndrome
R. Laatikainen et al.
ALIMENTARY PHARMACOLOGY & THERAPEUTICS (2016)
Comparison of culture-dependent and independent approaches to characterize fecal bifidobacteria and lactobacilli
Andrea Quartieri et al.
ANAEROBE (2016)
Fermented Milk Containing Lactobacillus casei Strain Shirota Preserves the Diversity of the Gut Microbiota and Relieves Abdominal Dysfunction in Healthy Medical Students Exposed to Academic Stress
Akito Kato-Kataoka et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2016)
Consumption of dairy foods in relation to impaired glucose metabolism and type 2 diabetes mellitus: the Maastricht Study
Simone J. P. M. Eussen et al.
BRITISH JOURNAL OF NUTRITION (2016)
Taking it Personally: Personalized Utilization of the Human Microbiome in Health and Disease
Niv Zmora et al.
CELL HOST & MICROBE (2016)
Stable Engraftment of Bifidobacterium longum AH1206 in the Human Gut Depends on Individualized Features of the Resident Microbiome
Maria X. Maldonado-Gomez et al.
Cell Host & Microbe (2016)
Correlation between body mass index and faecal microbiota from children
A. Ignacio et al.
CLINICAL MICROBIOLOGY AND INFECTION (2016)
A new perspective on microbial landscapes within food production
Nicholas A. Bokulich et al.
CURRENT OPINION IN BIOTECHNOLOGY (2016)
Nomadic lifestyle of Lactobacillus plantarum revealed by comparative genomics of 54 strains isolated from different habitats
Maria Elena Martino et al.
ENVIRONMENTAL MICROBIOLOGY (2016)
Beneficial metabolic effects of selected probiotics on diet-induced obesity and insulin resistance in mice are associated with improvement of dysbiotic gut microbiota
Jeanne Alard et al.
ENVIRONMENTAL MICROBIOLOGY (2016)
Korean traditional Chungkookjang improves body composition, lipid profiles and atherogenic indices in overweight/obese subjects: a double-blind, randomized, crossover, placebo-controlled clinical trial
M-S Byun et al.
EUROPEAN JOURNAL OF CLINICAL NUTRITION (2016)
The Variable Regions of Lactobacillus rhamnosus Genomes Reveal the Dynamic Evolution of Metabolic and Host-Adaptation Repertoires
Corina Ceapa et al.
GENOME BIOLOGY AND EVOLUTION (2016)
An integrated metagenomics pipeline for strain profiling reveals novel patterns of bacterial transmission and biogeography
Stephen Nayfach et al.
GENOME RESEARCH (2016)
FoodMicrobionet: A database for the visualisation and exploration of food bacterial communities based on network analysis
Eugenio Parente et al.
INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY (2016)
Composition and function of sourdough microbiota: From ecological theory to bread quality
Michael Gaenzle et al.
INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY (2016)
Evolution of sourdough microbiota in spontaneous sourdoughs started with different plant materials
Valery Ripari et al.
INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY (2016)
Ecological robustness of the gut microbiota in response to ingestion of transient food-borne microbes
Chenhong Zhang et al.
ISME JOURNAL (2016)
Study of duodenal bacterial communities by 16S rRNA gene analysis in adults with active celiac disease vs non-celiac disease controls
E. Nistal et al.
JOURNAL OF APPLIED MICROBIOLOGY (2016)
Strain-level microbial epidemiology and population genomics from shotgun metagenomics
Matthias Scholz et al.
NATURE METHODS (2016)
DADA2: High-resolution sample inference from Illumina amplicon data
Benjamin J. Callahan et al.
NATURE METHODS (2016)
Coming of age: ten years of next-generation sequencing technologies
Sara Goodwin et al.
NATURE REVIEWS GENETICS (2016)
Fermented food intake is associated with a reduced likelihood of atopic dermatitis in an adult population (Korean National Health and Nutrition Examination Survey 2012-2013)
Sunmin Park et al.
NUTRITION RESEARCH (2016)
Mining metagenomic whole genome sequences revealed subdominant but constant Lactobacillus population in the human gut microbiota
Maddalena Rossi et al.
ENVIRONMENTAL MICROBIOLOGY REPORTS (2016)
Probiotic Soy Product Supplemented with Isoflavones Improves the Lipid Profile of Moderately Hypercholesterolemic Men: A Randomized Controlled Trial
Daniela Cardoso Umbelino Cavallini et al.
NUTRIENTS (2016)
A Randomized, Double-Blind, Placebo-Controlled Trial: The Efficacy of Multispecies Probiotic Supplementation in Alleviating Symptoms of Irritable Bowel Syndrome Associated with Constipation
Valerio Mezzasalma et al.
BIOMED RESEARCH INTERNATIONAL (2016)
Bioactive Molecules Released in Food by Lactic Acid Bacteria: Encrypted Peptides and Biogenic Amines
Enrica Pessione et al.
FRONTIERS IN MICROBIOLOGY (2016)
The Metagenomics and Metadesign of the Subways and Urban Biomes (MetaSUB) International Consortium inaugural meeting report
Ariel Chernomoretz et al.
MICROBIOME (2016)
Metatranscriptomics reveals temperature-driven functional changes in microbiome impacting cheese maturation rate
Francesca De Filippis et al.
SCIENTIFIC REPORTS (2016)
Multiple sclerosis patients have a distinct gut microbiota compared to healthy controls
Jun Chen et al.
SCIENTIFIC REPORTS (2016)
IMNGS: A comprehensive open resource of processed 16S rRNA microbial profiles for ecology and diversity studies
Ilias Lagkouvardos et al.
SCIENTIFIC REPORTS (2016)
Structural and immunomodulatory differences among lactobacilli exopolysaccharides isolated from intestines of mice with experimentally induced inflammatory bowel disease
Sabina Gorska et al.
SCIENTIFIC REPORTS (2016)
Complete Genome Sequence of Streptococcus salivarius HSISS4, a Human Commensal Bacterium Highly Prevalent in the Digestive Tract
Johann Mignolet et al.
GENOME ANNOUNCEMENTS (2016)
Correlation of Lactobacillus rhamnosus Genotypes and Carbohydrate Utilization Signatures Determined by Phenotype Profiling
Corina Ceapa et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2015)
A Genomic View of Lactobacilli and Pediococci Demonstrates that Phylogeny Matches Ecology and Physiology
Jinshui Zheng et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2015)
Coexistence of Lactic Acid Bacteria and Potential Spoilage Microbiota in a Dairy Processing Environment
Giuseppina Stellato et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2015)
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
Dinghua Li et al.
BIOINFORMATICS (2015)
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Felipe A. Simao et al.
BIOINFORMATICS (2015)
A randomized controlled trial to test the effect of multispecies probiotics on cognitive reactivity to sad mood
Laura Steenbergen et al.
BRAIN BEHAVIOR AND IMMUNITY (2015)
Fermented dairy food and CVD risk
Linda C. Tapsell
BRITISH JOURNAL OF NUTRITION (2015)
Supplementation with Aspergillus oryzae-fermented kochujang lowers serum cholesterol in subjects with hyperlipidemia
Ji-Hee Lim et al.
CLINICAL NUTRITION (2015)
The small intestine microbiota, nutritional modulation and relevance for health
Sahar El Aidy et al.
CURRENT OPINION IN BIOTECHNOLOGY (2015)
Alterations in Intestinal Microbiota Correlate With Susceptibility to Type 1 Diabetes
Aimon K. Alkanani et al.
DIABETES (2015)
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Donovan H. Parks et al.
GENOME RESEARCH (2015)
Consumption of Yogurt, Low-Fat Milk, and Other Low-Fat Dairy Products Is Associated with Lower Risk of Metabolic Syndrome Incidence in an Elderly Mediterranean Population
Nancy Babio et al.
JOURNAL OF NUTRITION (2015)
Lactobacillus gasseri KS-13, Bifidobacterium bifidum G9-1, and Bifidobacterium longum MM-2 Ingestion Induces a Less Inflammatory Cytokine Profile and a Potentially Beneficial Shift in Gut Microbiota in Older Adults: A Randomized, Double-Blind, Placebo-Controlled, Crossover Study
Samuel J. Spaiser et al.
JOURNAL OF THE AMERICAN COLLEGE OF NUTRITION (2015)
Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota
Kristoffer Forslund et al.
NATURE (2015)
The oral and gut microbiomes are perturbed in rheumatoid arthritis and partly normalized after treatment
Xuan Zhang et al.
NATURE MEDICINE (2015)
Orchestrating high-throughput genomic analysis with Bioconductor
Wolfgang Huber et al.
NATURE METHODS (2015)
MetaPhlAn2 for enhanced metagenomic taxonomic profiling
Duy Tin Truong et al.
NATURE METHODS (2015)
Probiotic Lactobacillus rhamnosus GG therapy and microbiological programming in infantile colic: a randomized, controlled trial
Anna Partty et al.
PEDIATRIC RESEARCH (2015)
Maternal prenatal stress is associated with the infant intestinal microbiota
Maartje A. C. Zijlmans et al.
PSYCHONEUROENDOCRINOLOGY (2015)
Structure and function of the global ocean microbiome
Shinichi Sunagawa et al.
SCIENCE (2015)
Fate, activity, and impact of ingested bacteria within the human gut microbiota
Muriel Derrien et al.
TRENDS IN MICROBIOLOGY (2015)
Probiotic yogurt improves body mass index and fasting insulin levels without affecting serum leptin and adiponectin levels in non-alcoholic fatty liver disease (NAFLD)
Safoora Nabavi et al.
JOURNAL OF FUNCTIONAL FOODS (2015)
Expanding the biotechnology potential of lactobacilli through comparative genomics of 213 strains and associated genera
Zhihong Sun et al.
NATURE COMMUNICATIONS (2015)
Inclusion of Fermented Foods in Food Guides around the World
Stephanie N. Chilton et al.
NUTRIENTS (2015)
Comparative genomics Lactobacillus reuteri from sourdough reveals adaptation of an intestinal symbiont to food fermentations
Jinshui Zheng et al.
SCIENTIFIC REPORTS (2015)
Discovering pro biotic microorganisms: in vitro, in vivo, genetic and omics approaches
Konstantinos Papadimitriou et al.
FRONTIERS IN MICROBIOLOGY (2015)
Effect of Sourdough with Exopolysaccharide (EPS)-Producing Lactic Acid Bacteria (LAB) on Sensory Quality of Bread during Shelf Life
R. Di Monaco et al.
FOOD AND BIOPROCESS TECHNOLOGY (2015)
Proteolytic and ACE-inhibitory activities of probiotic yogurt containing non-viable bacteria as affected by different levels of fat, inulin and starter culture
Mansour Shakerian et al.
JOURNAL OF FOOD SCIENCE AND TECHNOLOGY-MYSORE (2015)
Short-Term Effects of Kefir-Fermented Milk Consumption on Bone Mineral Density and Bone Metabolism in a Randomized Clinical Trial of Osteoporotic Patients
Min-Yu Tu et al.
PLOS ONE (2015)
Changes in bile acids, FGF-19 and sterol absorption in response to bile salt hydrolase active L. reuteri NCIMB 30242
Christopher J. Martoni et al.
GUT MICROBES (2015)
Lactobacillus paracasei subsp paracasei L. casei W8 suppresses energy intake acutely
Anne Toksvig Bjerg et al.
APPETITE (2014)
Randomised clinical trial: a liquid multi-strain probiotic vs. placebo in the irritable bowel syndrome - a 12 week double-blind study
G. Sisson et al.
ALIMENTARY PHARMACOLOGY & THERAPEUTICS (2014)
Randomised clinical trial: the beneficial effects of VSL# 3 in obese children with non-alcoholic steatohepatitis
A. Alisi et al.
ALIMENTARY PHARMACOLOGY & THERAPEUTICS (2014)
Prokka: rapid prokaryotic genome annotation
Torsten Seemann
BIOINFORMATICS (2014)
Construction of a dairy microbial genome catalog opens new perspectives for the metagenomic analysis of dairy fermented products
Mathieu Almeida et al.
BMC GENOMICS (2014)
Dairy consumption and risk of type 2 diabetes: 3 cohorts of US adults and an updated meta-analysis
Mu Chen et al.
BMC MEDICINE (2014)
Role of the Microbiota in Immunity and Inflammation
Yasmine Belkaid et al.
CELL (2014)
The effects of co-administration of probiotics with herbal medicine on obesity, metabolic endotoxemia and dysbiosis: A randomized double-blind controlled clinical trial
Sin Ji Lee et al.
CLINICAL NUTRITION (2014)
Exopolysaccharides from Sourdough Lactic Acid Bacteria
Sandra Galle et al.
CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION (2014)
Aberrant gut microbiota composition at the onset of type 1 diabetes in young children
Marcus C. de Goffau et al.
DIABETOLOGIA (2014)
454 pyrosequencing reveals changes in the faecal microbiota of adults consuming Lactobacillus casei Zhang
Jiachao Zhang et al.
FEMS MICROBIOLOGY ECOLOGY (2014)
Probiotic VSL#3 Reduces Liver Disease Severity and Hospitalization in Patients With Cirrhosis: A Randomized, Controlled Trial
Radha K. Dhiman et al.
GASTROENTEROLOGY (2014)
Traditional cheeses: Rich and diverse microbiota with associated benefits
Marie-Christine Montel et al.
INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY (2014)
A randomized triple-masked controlled trial on the effects of synbiotics on inflammation markers in overweight children
Roya Kelishadi et al.
JORNAL DE PEDIATRIA (2014)
Increased Proportions of Bifidobacterium and the Lactobacillus Group and Loss of Butyrate-Producing Bacteria in Inflammatory Bowel Disease
Wei Wang et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2014)
Improvement of digestive health and reduction in proteobacterial populations in the gut microbiota of cystic fibrosis patients using a Lactobacillus reuteri probiotic preparation: A double blind prospective study
Rosa del Campo et al.
JOURNAL OF CYSTIC FIBROSIS (2014)
Effect of multispecies probiotics on irritable bowel syndrome: A randomized, double-blind, placebo-controlled trial
Jun Sik Yoon et al.
JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY (2014)
Modulation of Fecal Clostridiales Bacteria and Butyrate by Probiotic Intervention with Lactobacillus paracasei DG Varies among Healthy Adults
Chiara Ferrario et al.
JOURNAL OF NUTRITION (2014)
Synbiotic in the management of infantile colic: A randomised controlled trial
Hamidreza Kianifar et al.
JOURNAL OF PAEDIATRICS AND CHILD HEALTH (2014)
Diet rapidly and reproducibly alters the human gut microbiome
Lawrence A. David et al.
NATURE (2014)
Binning metagenomic contigs by coverage and composition
Johannes Alneberg et al.
NATURE METHODS (2014)
The International Scientific Association for Probiotics and Prebiotics consensus statement on the scope and appropriate use of the term probiotic
Colin Hill et al.
NATURE REVIEWS GASTROENTEROLOGY & HEPATOLOGY (2014)
Effect of Probiotic (VSL#3) and Omega-3 on Lipid Profile, Insulin Sensitivity, Inflammatory Markers, and Gut Colonization in Overweight Adults: A Randomized, Controlled Trial
Hemalatha Rajkumar et al.
MEDIATORS OF INFLAMMATION (2014)
Ribosomal Database Project: data and tools for high throughput rRNA analysis
James R. Cole et al.
NUCLEIC ACIDS RESEARCH (2014)
Probiotic supplementation improves inflammatory status in patients with rheumatoid arthritis
Elnaz Vaghef-Mehrabany et al.
NUTRITION (2014)
Beneficial effects of Lactobacillus plantarum on glycemia and homocysteine levels in postmenopausal women with metabolic syndrome
Fablola Malaga Barreto et al.
NUTRITION (2014)
Disrupted Intestinal Microbiota and Intestinal Inflammation in Children with Cystic Fibrosis and Its Restoration with Lactobacillus GG: A Randomised Clinical Trial
Eugenia Bruzzese et al.
PLOS ONE (2014)
Treating infant colic with the probiotic Lactobacillus reuteri: double blind, placebo controlled randomised trial
Valerie Sung et al.
BMJ-BRITISH MEDICAL JOURNAL (2014)
Comparative genomics analysis of Lactobacillus species associated with weight gain or weight protection
F. Drissi et al.
NUTRITION & DIABETES (2014)
Kraken: ultrafast metagenomic sequence classification using exact alignments
Derrick E. Wood et al.
GENOME BIOLOGY (2014)
The microbes we eat: abundance and taxonomy of microbes consumed in a day's worth of meals for three diet types
Jenna M. Lang et al.
PEERJ (2014)
Beneficial Effects of Fresh and Fermented Kimchi in Prediabetic Individuals
So-Yeon An et al.
ANNALS OF NUTRITION AND METABOLISM (2013)
High-Throughput Sequencing and Metagenomics: Moving Forward in the Culture-Independent Analysis of Food Microbial Ecology
Danilo Ercolini
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)
Consumption of dairy products and associations with incident diabetes, CHD and mortality in the Whitehall II study
Sabita S. Soedamah-Muthu et al.
BRITISH JOURNAL OF NUTRITION (2013)
Faecal levels of Bifidobacterium and Clostridium coccoides but not plasma lipopolysaccharide are inversely related to insulin and HOMA index in women
T. F. S. Teixeira et al.
CLINICAL NUTRITION (2013)
Effect of daily consumption of probiotic yoghurt on insulin resistance in pregnant women: a randomized controlled trial
Z. Asemi et al.
EUROPEAN JOURNAL OF CLINICAL NUTRITION (2013)
Consumption of Fermented Milk Product With Probiotic Modulates Brain Activity
Kirsten Tillisch et al.
GASTROENTEROLOGY (2013)
Effect of probiotic bacteria on the intestinal microbiota in irritable bowel syndrome
Siew Chien Ng et al.
JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY (2013)
Kimchi, a Fermented Vegetable, Improves Serum Lipid Profiles in Healthy Young Adults: Randomized Clinical Trial
In Hwa Choi et al.
JOURNAL OF MEDICINAL FOOD (2013)
A PROBIOTICS-CONTAINING BISCUIT MODULATES THE INTESTINAL MICROBIOTA IN THE ELDERLY
S. Rampelli et al.
JOURNAL OF NUTRITION HEALTH & AGING (2013)
Richness of human gut microbiome correlates with metabolic markers
Emmanuelle Le Chatelier et al.
NATURE (2013)
Dietary intervention impact on gut microbial gene richness
Aurelie Cotillard et al.
NATURE (2013)
Gut metagenome in European women with normal, impaired and diabetic glucose control
Fredrik H. Karlsson et al.
NATURE (2013)
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
Morgan G. I. Langille et al.
NATURE BIOTECHNOLOGY (2013)
Metagenomic species profiling using universal phylogenetic marker genes
Shinichi Sunagawa et al.
NATURE METHODS (2013)
Fermented milk improves glucose metabolism in exercise-induced muscle damage in young healthy men
Masayo Iwasa et al.
NUTRITION JOURNAL (2013)
454 Pyrosequencing Analysis on Faecal Samples from a Randomized DBPC Trial of Colicky Infants Treated with Lactobacillus reuteri DSM 17938
Stefan Roos et al.
PLOS ONE (2013)
Oligotyping: differentiating between closely related microbial taxa using 16S rRNA gene data
A. Murat Eren et al.
METHODS IN ECOLOGY AND EVOLUTION (2013)
Menaquinones, Bacteria, and the Food Supply: The Relevance of Dairy and Fermented Food Products to Vitamin K Requirements
Barbara Walther et al.
ADVANCES IN NUTRITION (2013)
Associations between the human intestinal microbiota, Lactobacillus rhamnosus GG and serum lipids indicated by integrated analysis of high-throughput profiling data
Leo Lahti et al.
PEERJ (2013)
The amount and type of dairy product intake and incident type 2 diabetes: results from the EPIC-InterAct Study
Ivonne Sluijs et al.
AMERICAN JOURNAL OF CLINICAL NUTRITION (2012)
Functional Analysis of Lactobacillus rhamnosus GG Pili in Relation to Adhesion and Immunomodulatory Interactions with Intestinal Epithelial Cells
Sarah Lebeer et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2012)
Bacteriocin Production: a Probiotic Trait?
Alleson Dobson et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2012)
Analysis of the Lactobacillus casei supragenome and its influence in species evolution and lifestyle adaptation
Jeff R. Broadbent et al.
BMC GENOMICS (2012)
Defining a Healthy Human Gut Microbiome: Current Concepts, Future Directions, and Clinical Applications
Fredrik Backhed et al.
CELL HOST & MICROBE (2012)
Gut Microbiota Composition and Activity in Relation to Host Metabolic Phenotype and Disease Risk
Elaine Holmes et al.
CELL METABOLISM (2012)
Technological and probiotic role of adjunct cultures of non-starter lactobacilli in soft cheeses
Patricia Burns et al.
FOOD MICROBIOLOGY (2012)
Effects of a Lactobacillus salivarius Probiotic Intervention on Infection, Cold Symptom Duration and Severity, and Mucosal Immunity in Endurance Athletes
Michael Gleeson et al.
INTERNATIONAL JOURNAL OF SPORT NUTRITION AND EXERCISE METABOLISM (2012)
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
Daniel McDonald et al.
ISME JOURNAL (2012)
World Gastroenterology Organisation Global Guidelines Probiotics and Prebiotics October 2011
Francisco Guarner et al.
JOURNAL OF CLINICAL GASTROENTEROLOGY (2012)
Effect of the consumption of a new symbiotic shake on glycemia and cholesterol levels in elderly people with type 2 diabetes mellitus
Camila Moroti et al.
LIPIDS IN HEALTH AND DISEASE (2012)
Structure, function and diversity of the healthy human microbiome
Curtis Huttenhower et al.
NATURE (2012)
The sequence read archive: explosive growth of sequencing data
Yuichi Kodama et al.
NUCLEIC ACIDS RESEARCH (2012)
Probiotic yogurt improves antioxidant status in type 2 diabetic patients
Hanie S. Ejtahed et al.
NUTRITION (2012)
Probiotics, Symptoms, and Gut Microbiota: What Are the Relations? A Randomized Controlled Trial in Subjects with Irritable Bowel Syndrome
Per G. Farup et al.
GASTROENTEROLOGY RESEARCH AND PRACTICE (2012)
Lactic acid bacteria contribution to gut microbiota complexity: lights and shadows
Enrica Pessione
FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY (2012)
Dairy products and its association with incidence of cardiovascular disease: the Malmo diet and cancer cohort
Emily Sonestedt et al.
EUROPEAN JOURNAL OF EPIDEMIOLOGY (2011)
Predominant genera of fecal microbiota in children with atopic dermatitis are not altered by intake of probiotic bacteria Lactobacillus acidophilus NCFM and Bifidobacterium animalis subsp lactis Bi-07
Nadja Larsen et al.
FEMS MICROBIOLOGY ECOLOGY (2011)
Fate and efficacy of lacticin 3147-producing Lactococcus lactis in the mammalian gastrointestinal tract
Alleson Dobson et al.
FEMS MICROBIOLOGY ECOLOGY (2011)
Yogurt consumption and risk of colorectal cancer in the Italian European Prospective Investigation into Cancer and Nutrition cohort
Valeria Pala et al.
INTERNATIONAL JOURNAL OF CANCER (2011)
B-Group vitamin production by lactic acid bacteria - current knowledge and potential applications
J. G. LeBlanc et al.
JOURNAL OF APPLIED MICROBIOLOGY (2011)
Influence of a combination of two potential probiotic strains, Lactobacillus rhamnosus IMC 501® and Lactobacillus paracasei IMC 502® on bowel habits of healthy adults
M. C. Verdenelli et al.
LETTERS IN APPLIED MICROBIOLOGY (2011)
Changes in Diet and Lifestyle and Long-Term Weight Gain in Women and Men
Dariush Mozaffarian et al.
NEW ENGLAND JOURNAL OF MEDICINE (2011)
Fermented kimchi reduces body weight and improves metabolic parameters in overweight and obese patients
Eun Kyoung Kim et al.
NUTRITION RESEARCH (2011)
Gut Microbiota is Not Modified by Randomized, Double-Blind, Placebo-Controlled Trial of VSL#3 in Diarrhea-Predominant Irritable Bowel Syndrome
Sonia Michail et al.
PROBIOTICS AND ANTIMICROBIAL PROTEINS (2011)
Intestinal and immunological effects of daily oral administration of Lactobacillus salivarius CECT5713 to healthy adults
Saleta Sierra et al.
ANAEROBE (2010)
Phenotypic and genomic diversity of Lactobacillus plantarum strains isolated from various environmental niches
Roland J. Siezen et al.
ENVIRONMENTAL MICROBIOLOGY (2010)
A human gut microbial gene catalogue established by metagenomic sequencing
Junjie Qin et al.
NATURE (2010)
Lactobacillus casei Abundance Is Associated with Profound Shifts in the Infant Gut Microbiome
Michael J. Cox et al.
PLOS ONE (2010)
Gut Microbiota in Human Adults with Type 2 Diabetes Differs from Non-Diabetic Adults
Nadja Larsen et al.
PLOS ONE (2010)
Lactobacillus reuteri DSM 17938 in Infantile Colic: A Randomized, Double-Blind, Placebo-Controlled Trial
Francesco Savino et al.
PEDIATRICS (2010)
Safety assessment of probiotics for human use
Mary Ellen Sanders et al.
GUT MICROBES (2010)
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
Patrick D. Schloss et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)
Genome Sequence and Comparative Genome Analysis of Lactobacillus casei: Insights into Their Niche-Associated Evolution
Hui Cai et al.
GENOME BIOLOGY AND EVOLUTION (2009)
Microbial community profiling for human microbiome projects: Tools, techniques, and challenges
Micah Hamady et al.
GENOME RESEARCH (2009)
In vivo study on the effectiveness of pediocin PA-1 and Pediococcus acidilactici UL5 at inhibiting Listeria monocytogenes
Nassra Dabour et al.
INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY (2009)
Genome-scale analyses of health-promoting bacteria: probiogenomics
Marco Ventura et al.
NATURE REVIEWS MICROBIOLOGY (2009)
Cultured milk, yogurt, and dairy intake in relation to bladder cancer risk in a prospective study of Swedish women and men
Susanna C. Larsson et al.
AMERICAN JOURNAL OF CLINICAL NUTRITION (2008)
Ecological role of lactobacilli in the gastrointestinal tract: Implications for fundamental and biomedical research
Jens Walter
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2008)
Oral delivery of Lactobacillus casei Shirota modifies allergen-induced immune responses in allergic rhinitis
K. Ivory et al.
CLINICAL AND EXPERIMENTAL ALLERGY (2008)
Modulation of Helicobacter pylori colonization with cranberry juice and Lactobacillus johnsonii La1 in children
Martin Gotteland et al.
NUTRITION (2008)
S layer protein A of Lactobacillus acidophilus NCFM regulates immature dendritic cell and T cell functions
Sergey R. Konstantinov et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
SILVA:: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
Elmar Pruesse et al.
NUCLEIC ACIDS RESEARCH (2007)
In vitro inhibition activity of nisin A, nisin Z, pediocin PA-1 and antibiotics against common intestinal bacteria
G. Le Blay et al.
LETTERS IN APPLIED MICROBIOLOGY (2007)
Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases
Daniel N. Frank et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Effects of multispecies probiotic supplementation on intestinal microbiota in irritable bowel syndrome
K. Kajander et al.
ALIMENTARY PHARMACOLOGY & THERAPEUTICS (2007)
Genotypic and phenotypic characterization of Lactobacillus casei strains isolated from different ecological niches suggests frequent recombination and niche specificity
Hui Cai et al.
MICROBIOLOGY-SGM (2007)
Understanding the effects of diet on bacterial metabolism in the large intestine
P. Louis et al.
JOURNAL OF APPLIED MICROBIOLOGY (2007)
Bacteriocin production as a mechanism for the antfinfective activity of Lactobacillus salivarius UCC118
Sinead C. Corr et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Multicenter randomized-control led clinical trial of probiotics (Lactobacillus johnsonii, LA1) on early endoscopic recurrence of Crohn's disease after ileo-caecal resection
Andre Van Gossum et al.
INFLAMMATORY BOWEL DISEASES (2007)
Probiotics and prebiotic galacto-oligosaccharides in the prevention of allergic diseases: A randomized, double-blind, placebo-controlled trial
Kaarina Kukkonen et al.
JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY (2007)
Selecting lactic acid bacteria for their safety and functionality by use of a mouse colitis model
Catherine Daniel et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2006)
The gut flora as a forgotten organ
Ann M. O'Hara et al.
EMBO REPORTS (2006)
Ineffectiveness of Lactobacillus johnsonii LA1 for prophylaxis of postoperative recurrence in Crohn's disease:: a randomised, double blind, placebo controlled GETAID trial
P. Marteau et al.
GUT (2006)
Oral administration of two probiotic strains, Lactobacillus gasseri CECT5714 and Lactobacillus coryniformis CECT5711, enhances the intestinal function of healthy adults
M Olivares et al.
INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY (2006)
Bile salt hydrolase activity in probiotics
M Begley et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2006)
Molecular analysis of jejunal, ileal, caecal and recto-sigmoidal human colonic microbiota using 16S rRNA gene libraries and terminal restriction fragment length polymorphism
H Hayashi et al.
JOURNAL OF MEDICAL MICROBIOLOGY (2005)
Obesity alters gut microbial ecology
RE Ley et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Enhanced anti inflammatory capacity of a Lactobacillus plantarum mutant synthesizing modified teichoic acids
C Grangette et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Diversity of the human intestinal microbial flora
PB Eckburg et al.
SCIENCE (2005)
Community genomics in microbial ecology and evolution
EE Allen et al.
NATURE REVIEWS MICROBIOLOGY (2005)
Host-bacterial mutualism in the human intestine
F Bäckhed et al.
SCIENCE (2005)
Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus
A Bolotin et al.
NATURE BIOTECHNOLOGY (2004)
Development of an extensive set of 16S rDNA-targeted primers for quantification of pathogenic and indigenous bacteria in faecal samples by real-time PCR
T Rinttila et al.
JOURNAL OF APPLIED MICROBIOLOGY (2004)
Lactic acid bacteria secrete metabolites retaining anti-inflammatory properties after intestinal transport
S Ménard et al.
GUT (2004)
Increased complexity of the species composition of lactic acid bacteria in human feces revealed by alternative incubation condition
F Dal Bello et al.
MICROBIAL ECOLOGY (2003)
The intestinal LABs
EE Vaughan et al.
ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY (2002)
Extensive set of 16S rRNA-based probes for detection of bacteria in human feces
HJM Harmsen et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2002)
Phylogenetic analysis of the human gut microbiota using 16S rDNA clone libraries and strictly anaerobic culture-based methods
H Hayashi et al.
MICROBIOLOGY AND IMMUNOLOGY (2002)
Detection of Lactobacillus, Pediococcus, Leuconostoc, and Weissella species in human feces by using group-specific PCR primers and denaturing gradient gel electrophoresis
J Walter et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2001)
The complete genome sequence of the lactic acid bacterium Lactococcus lactis ssp lactis IL1403
A Bolotin et al.
GENOME RESEARCH (2001)
Analysis of the fecal microflora of human subjects consuming a probiotic product containing Lactobacillus rhamnosus DR20
GW Tannock et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2000)