4.7 Review

Mutations in transmembrane proteins: diseases, evolutionary insights, prediction and comparison with globular proteins

Journal

BRIEFINGS IN BIOINFORMATICS
Volume 22, Issue 3, Pages -

Publisher

OXFORD UNIV PRESS
DOI: 10.1093/bib/bbaa132

Keywords

transmembrane proteins; missense mutations; single amino acid variants; predicting variant effects; direct coupling analysis; evolutionary conservation

Funding

  1. Deutsche Forschungsgemeinschaft [FR1411/14-1]
  2. Russian Science Foundation [17-15-01292-II]

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Membrane proteins, by interacting with lipid bilayers, play crucial roles in transporting molecules and relaying signals between cells. Mutations in these proteins can have profound effects on the host's fitness, as shown in experimental studies and evolutionary signals.
Membrane proteins are unique in that they interact with lipid bilayers, making them indispensable for transporting molecules and relaying signals between and across cells. Due to the significance of the protein's functions, mutations often have profound effects on the fitness of the host. This is apparent both from experimental studies, which implicated numerous missense variants in diseases, as well as from evolutionary signals that allow elucidating the physicochemical constraints that intermembrane and aqueous environments bring. In this review, we report on the current state of knowledge acquired on missense variants (referred to as to single amino acid variants) affecting membrane proteins as well as the insights that can be extrapolated from data already available. This includes an overview of the annotations for membrane protein variants that have been collated within databases dedicated to the topic, bioinformatics approaches that leverage evolutionary information in order to shed light on previously uncharacterized membrane protein structures or interaction interfaces, tools for predicting the effects of mutations tailored specifically towards the characteristics of membrane proteins as well as two clinically relevant case studies explaining the implications of mutated membrane proteins in cancer and cardiomyopathy.

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