ADFTstudy of structure and stability of pleated and rippled cross-β sheets with hydrophobic sidechains

The rippled cross-beta sheet, a topography, in which mirror-image peptides are arranged with alternating chirality into a periodic two-dimensional network, is burgeoning as a new design principle for materials and biomedical applications. Experiments by the Schneider, Nilsson, and Raskatov labs have independently shown diverse racemic mixtures of aggregation-prone peptide of different sizes to favor the rippled over the pleated topography. Yet, systematic ab initio studies are lacking, and the field is yet to develop rules that would enable the design of new rippled cross-beta frameworks from first principles. Here, DFT calculations were performed on a set of model systems, designed to begin understanding the impact that bulky, hydrophobic sidechains have upon the formation of pleated and rippled cross-beta frameworks. It is hoped that this study will help stimulate the development of a predictive, general framework to enable rational design of rippled cross-beta sheets in the future.

Automated summary

The rippled cross-beta sheet is emerging as a new design principle, but further research is needed to develop predictive design rules.