4.4 Review

Transcriptome view of a killer: African swine fever virus

Journal

BIOCHEMICAL SOCIETY TRANSACTIONS
Volume 48, Issue 4, Pages 1569-1581

Publisher

PORTLAND PRESS LTD
DOI: 10.1042/BST20191108

Keywords

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Funding

  1. Wellcome Investigator Award in Science `Mechanisms and Regulation of RNAP transcription' [WT 207446/Z/17/Z]
  2. Wellcome Trust ISMB 4-year PhD programme `Macromolecular machines: interdisciplinary training grounds for structural, computational and chemical biology' [WT 108877/B/15/Z]

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African swine fever virus (ASFV) represents a severe threat to global agriculture with the world's domestic pig population reduced by a quarter following recent outbreaks in Europe and Asia. Like other nucleocytoplasmic large DNA viruses, ASFV encodes a transcription apparatus including a eukaryote-like RNA polymerase along with a combination of virus-specific, and host-related transcription factors homologous to the TATA-binding protein (TBP) and TFIIB. Despite its high impact, the molecular basis and temporal regulation of ASFV transcription is not well understood. Our lab recently applied deep sequencing approaches to characterise the viral transcriptome and gene expression during early and late ASFV infection. We have characterised the viral promoter elements and termination signatures, by mapping the RNA-5' and RNA-3' termini at single nucleotide resolution. In this review, we discuss the emerging field of ASFV transcripts, transcription, and transcriptomics.

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