Related references
Note: Only part of the references are listed.Progression of whole-blood transcriptional signatures from interferon-induced to neutrophil-associated patterns in severe influenza
Jake Dunning et al.
NATURE IMMUNOLOGY (2018)
Environmental factors influencing the development and spread of antibiotic resistance
Johan Bengtsson-Palme et al.
FEMS MICROBIOLOGY REVIEWS (2018)
Prevalence of Antibiotic Resistance Genes among Human Gut- Derived Bifidobacteria
Sabrina Duranti et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2017)
MEGARes: an antimicrobial resistance database for high throughput sequencing
Steven M. Lakin et al.
NUCLEIC ACIDS RESEARCH (2017)
A Different Microbiome Gene Repertoire in the Airways of Cystic Fibrosis Patients with Severe Lung Disease
Giovanni Bacci et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2017)
Overexpression of antibiotic resistance genes in hospital effluents over time
Will P. M. Rowe et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2017)
Antimicrobial susceptibility to β-lactam antibiotics and production of BRO blactamase in clinical isolates of Moraxella catarrhalis from a Japanese hospital
Kageto Yamada et al.
JOURNAL OF MICROBIOLOGY IMMUNOLOGY AND INFECTION (2017)
FMAP: Functional Mapping and Analysis Pipeline for metagenomics and metatranscriptomics studies
Jiwoong Kim et al.
BMC BIOINFORMATICS (2016)
The Roles of Type I Interferon in Bacterial Infection
Gayle M. Boxx et al.
CELL HOST & MICROBE (2016)
Guanylate-Binding Protein 1, an Interferon-Induced GTPase, Exerts an Antiviral Activity against Classical Swine Fever Virus Depending on Its GTPase Activity
Lian-Feng Li et al.
JOURNAL OF VIROLOGY (2016)
The ABC of Ribosome-Related Antibiotic Resistance
Daniel N. Wilson
MBIO (2016)
The Role of Bacterial Secretion Systems in the Virulence of Gram-Negative Airway Pathogens Associated with Cystic Fibrosis
Sofie Depluverez et al.
FRONTIERS IN MICROBIOLOGY (2016)
Commensal Streptococci Serve as a Reservoir for β-Lactam Resistance Genes in Streptococcus pneumoniae
Anders Jensen et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2015)
The Human Gut Microbiome as a Transporter of Antibiotic Resistance Genes between Continents
Johan Bengtsson-Palme et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2015)
Mining microbial metatranscriptomes for expression of antibiotic resistance genes under natural conditions
Dennis Versluis et al.
SCIENTIFIC REPORTS (2015)
Multiscale Embedded Gene Co-expression Network Analysis
Won-Min Song et al.
PLOS COMPUTATIONAL BIOLOGY (2015)
Insights into the respiratory tract microbiota of patients with cystic fibrosis during early Pseudomonas aeruginosa colonization
Marlene Keravec et al.
SPRINGERPLUS (2015)
Prevalence and resistance pattern of Moraxella catarrhalis in community-acquired lower respiratory tract infections
Safia Bader Uddin Shaikh et al.
INFECTION AND DRUG RESISTANCE (2015)
The microbiome of uncontacted Amerindians
Jose C. Clemente et al.
SCIENCE ADVANCES (2015)
NASAL COLONIZATION AND LOWER RESPIRATORY TRACT INFECTIONS WITH METHICILLIN-RESISTANT STAPHYLOCOCCUS AUREUS
Belen Tilahun et al.
AMERICAN JOURNAL OF CRITICAL CARE (2015)
Fast and sensitive protein alignment using DIAMOND
Benjamin Buchfink et al.
NATURE METHODS (2015)
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
Yang Liao et al.
BIOINFORMATICS (2014)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
Helminth Colonization Is Associated with Increased Diversity of the Gut Microbiota
Soo Ching Lee et al.
PLOS NEGLECTED TROPICAL DISEASES (2014)
Kraken: ultrafast metagenomic sequence classification using exact alignments
Derrick E. Wood et al.
GENOME BIOLOGY (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
Immune Dysfunction and Bacterial Coinfections following Influenza
Dennis W. Metzger et al.
JOURNAL OF IMMUNOLOGY (2013)
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
Paul J. McMurdie et al.
PLOS ONE (2013)
RND multidrug efflux pumps: what are they good for?
Carolina Alvarez-Ortega et al.
FRONTIERS IN MICROBIOLOGY (2013)
SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data
Evguenia Kopylova et al.
BIOINFORMATICS (2012)
Guanylate-Binding Proteins: Niche Recruiters for Antimicrobial Effectors
Christopher D. Dupont et al.
IMMUNITY (2012)
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
J. Gregory Caporaso et al.
ISME JOURNAL (2012)
FastUniq: A Fast De Novo Duplicates Removal Tool for Paired Short Reads
Haibin Xu et al.
PLOS ONE (2012)
Dominant Cross-Reactive B Cell Response during Secondary Acute Dengue Virus Infection in Humans
Simona Zompi et al.
PLOS NEGLECTED TROPICAL DISEASES (2012)
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
Brian J. Haas et al.
GENOME RESEARCH (2011)
Fast Identification and Removal of Sequence Contamination from Genomic and Metagenomic Datasets
Robert Schmieder et al.
PLOS ONE (2011)
A Family of IFN-γ-Inducible 65-kD GTPases Protects Against Bacterial Infection
Bae-Hoon Kim et al.
SCIENCE (2011)
Metagenomic biomarker discovery and explanation
Nicola Segata et al.
GENOME BIOLOGY (2011)
Persistence of antibiotic resistance in bacterial populations
Dan I. Andersson et al.
FEMS MICROBIOLOGY REVIEWS (2011)
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
Mark D. Robinson et al.
BIOINFORMATICS (2010)
Sparse partial least squares regression for simultaneous dimension reduction and variable selection
Hyonho Chun et al.
JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY (2010)
QIIME allows analysis of high-throughput community sequencing data
J. Gregory Caporaso et al.
NATURE METHODS (2010)
Risk factors for pneumonia in immunocompromised patients with influenza
David Schnell et al.
RESPIRATORY MEDICINE (2010)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
Protein secretion systems in bacterial-host associations, and their description in the Gene Ontology
Tsai-Tien Tseng et al.
BMC MICROBIOLOGY (2009)
Occurrence of staphylococci in the oral cavities of healthy adults and nasal-oral trafficking of the bacteria
Y. Ohara-Nemoto et al.
JOURNAL OF MEDICAL MICROBIOLOGY (2008)
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
Qiong Wang et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)
Modes and modulations of antibiotic resistance gene expression
Florence Depardieu et al.
CLINICAL MICROBIOLOGY REVIEWS (2007)
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
T. Z. DeSantis et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2006)
Production of BRO β-lactamases and resistance to complement in European Moraxella catarrhalis isolates
FJ Schmitz et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2002)
Share Paper
