Related references
Note: Only part of the references are listed.Assembly of long, error-prone reads using repeat graphs
Mikhail Kolmogorov et al.
NATURE BIOTECHNOLOGY (2019)
The Cytokinin Complex Associated With Rhodococcus fascians: Which Compounds Are Critical for Virulence?
Paula E. Jameson et al.
FRONTIERS IN PLANT SCIENCE (2019)
The Evolution, Ecology, and Mechanisms of Infection by Gram-Positive, Plant-Associated Bacteria
Shree P. Thapa et al.
ANNUAL REVIEW OF PHYTOPATHOLOGY, VOL 57, 2019 (2019)
Two Pantoea agglomerans type III effectors can transform nonpathogenic and phytopathogenic bacteria into host-specific gall-forming pathogens
Gal Nissan et al.
MOLECULAR PLANT PATHOLOGY (2019)
Ecological and evolutionary dynamics of a model facultative pathogen: Agrobacterium and crown gall disease of plants
Ian S. Barton et al.
ENVIRONMENTAL MICROBIOLOGY (2018)
Should I fight or should I grow now? The role of cytokinins in plant growth and immunity and in the growth-defence trade-off
Tessa Albrecht et al.
ANNALS OF BOTANY (2017)
Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation
Sergey Koren et al.
GENOME RESEARCH (2017)
The modified base isopentenyladenosine and its derivatives in tRNA
Ulrich Schweizer et al.
RNA BIOLOGY (2017)
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads
Ryan R. Wick et al.
PLOS COMPUTATIONAL BIOLOGY (2017)
Evolutionary transitions between beneficial and phytopathogenic Rhodococcus challenge disease management
Elizabeth A. Savory et al.
ELIFE (2017)
Plasmid Classification in an Era of Whole-Genome Sequencing: Application in Studies of Antibiotic Resistance Epidemiology
Alex Orlek et al.
FRONTIERS IN MICROBIOLOGY (2017)
A Leaf-Inhabiting Endophytic Bacterium, Rhodococcus sp KB6, Enhances Sweet Potato Resistance to Black Rot Disease Caused by Ceratocystis fimbriata
Chi Eun Hong et al.
JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY (2016)
The genomic signatures of Shigella evolution, adaptation and geographical spread
Hao Chung The et al.
NATURE REVIEWS MICROBIOLOGY (2016)
Mining the genome of Rhodococcus fascians, a plant growth-promoting bacterium gone astray
Isolde M. Francis et al.
NEW BIOTECHNOLOGY (2016)
Rapid emergence of pathogens in agro-ecosystems: global threats to agricultural sustainability and food security
Bruce A. McDonald et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2016)
Bandage: interactive visualization ofde novogenome assemblies: Fig. 1.
Ryan R. Wick et al.
BIOINFORMATICS (2015)
De novo biosynthesis of cytokinins in the biotrophic fungus Claviceps purpurea
Janine Hinsch et al.
ENVIRONMENTAL MICROBIOLOGY (2015)
Functional overlap of the Arabidopsis leaf and root microbiota
Yang Bai et al.
NATURE (2015)
Methylated Cytokinins from the Phytopathogen Rhodococcus fascians Mimic Plant Hormone Activity
Venkatesan Radhika et al.
PLANT PHYSIOLOGY (2015)
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
Lam-Tung Nguyen et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
Draft Genome Sequence of Rhodococcus sp. Strain 311R
Elham Ehsani et al.
GENOME ANNOUNCEMENTS (2015)
Prokka: rapid prokaryotic genome annotation
Torsten Seemann
BIOINFORMATICS (2014)
Isopentenyltransferase-1 (IPT1) knockout in Physcomitrella together with phylogenetic analyses of IPTs provide insights into evolution of plant cytokinin biosynthesis
Ann-Cathrin Lindner et al.
JOURNAL OF EXPERIMENTAL BOTANY (2014)
Metabolomic Tools for Secondary Metabolite Discovery from Marine Microbial Symbionts
Lynsey Macintyre et al.
MARINE DRUGS (2014)
Analysis of Genome Sequences from Plant Pathogenic Rhodococcus Reveals Genetic Novelties in Virulence Loci
Allison L. Creason et al.
PLOS ONE (2014)
Parallel independent evolution of pathogenicity within the genus Yersinia
Sandra Reuter et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
GET_HOMOLOGUES, a Versatile Software Package for Scalable and Robust Microbial Pangenome Analysis
Bruno Contreras-Moreira et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Kazutaka Katoh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Cytokinins Act Synergistically with Salicylic Acid to Activate Defense Gene Expression in Rice
Chang-Jie Jiang et al.
MOLECULAR PLANT-MICROBE INTERACTIONS (2013)
The Tzs Protein and Exogenous Cytokinin Affect Virulence Gene Expression and Bacterial Growth of Agrobacterium tumefaciens
Hau-Hsuan Hwang et al.
PHYTOPATHOLOGY (2013)
Radical-Mediated Enzymatic Methylation: A Tale of Two SAMS
Qi Zhang et al.
ACCOUNTS OF CHEMICAL RESEARCH (2012)
Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice
Claudia Knief et al.
ISME JOURNAL (2012)
pFiD188, the Linear Virulence Plasmid of Rhodococcus fascians D188
Isolde Francis et al.
MOLECULAR PLANT-MICROBE INTERACTIONS (2012)
Defining the core Arabidopsis thaliana root microbiome
Derek S. Lundberg et al.
NATURE (2012)
Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota
Davide Bulgarelli et al.
NATURE (2012)
NIH Image to ImageJ: 25 years of image analysis
Caroline A. Schneider et al.
NATURE METHODS (2012)
Microbial life in the phyllosphere
Julia A. Vorholt
NATURE REVIEWS MICROBIOLOGY (2012)
A Successful Bacterial Coup d'Etat: How Rhodococcus fascians Redirects Plant Development
Elisabeth Stes et al.
ANNUAL REVIEW OF PHYTOPATHOLOGY, VOL 49 (2011)
Cytokinins Mediate Resistance against Pseudomonas syringae in Tobacco through Increased Antimicrobial Phytoalexin Synthesis Independent of Salicylic Acid Signaling
Dominik K. Grosskinsky et al.
PLANT PHYSIOLOGY (2011)
The Cytokinin-Activated Transcription Factor ARR2 Promotes Plant Immunity via TGA3/NPR1-Dependent Salicylic Acid Signaling in Arabidopsis
Jaemyung Choi et al.
DEVELOPMENTAL CELL (2010)
Rhodococcus fascians Impacts Plant Development Through the Dynamic Fas-Mediated Production of a Cytokinin Mix
Ine Pertry et al.
MOLECULAR PLANT-MICROBE INTERACTIONS (2010)
The Genome of a Pathogenic Rhodococcus: Cooptive Virulence Underpinned by Key Gene Acquisitions
Michal Letek et al.
PLOS GENETICS (2010)
Identification of Rhodococcus fascians cytokinins and their modus operandi to reshape the plant
Ine Pertry et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria
Nathanael Delmotte et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Cytokinins induce sporulation in Dictyostelium
Christophe Anjard et al.
DEVELOPMENT (2008)
A novel method to generate unmarked gene deletions in the intracellular pathogen Rhodococcus equi using 5-fluorocytosine conditional lethality
R. van der Geize et al.
NUCLEIC ACIDS RESEARCH (2008)
The type IV secretion system component VirB5 binds to the trans-zeatin biosynthetic enzyme Tzs and enables its translocation to the cell surface of Agrobacterium tumefaciens
Khaled Ahmed Aly et al.
JOURNAL OF BACTERIOLOGY (2008)
Streptomyces turgidiscabies possesses a functional cytokinin biosynthetic pathway and produces leafy galls
Madhumita V. Joshi et al.
MOLECULAR PLANT-MICROBE INTERACTIONS (2007)
Rhodococcus fascians in herbaceous perennials
M. L. Putnam et al.
PLANT DISEASE (2007)
Rhodococcus fascians:: Shoot proliferation without elevated cytokinins?
I Galis et al.
PLANT GROWTH REGULATION (2005)
Distinct isoprenoid origins of cis- and trans-zeatin biosyntheses in Arabidopsis
H Kasahara et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2004)
The att locus of Rhodococcus fascians strain D188 is essential for full virulence on tobacco through the production of an autoregulatory compound
T Maes et al.
MOLECULAR MICROBIOLOGY (2001)
Identification of genes encoding adenylate isopentenyltransferase, a cytokinin biosynthesis enzyme, in Arabidopsis thaliana
K Takei et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2001)
Leafy gall formation is controlled by fasR, an AraC-type regulatory gene in Rhodococcus fascians
W Temmerman et al.
JOURNAL OF BACTERIOLOGY (2000)