Related references
Note: Only part of the references are listed.The choice of universal primers and the characteristics of the species mixture determine when DNA metabarcoding can be quantitative
Josep Pinol et al.
MOLECULAR ECOLOGY (2019)
How much is enough? Effects of technical and biological replication on metabarcoding dietary analysis
Vanessa A. Mata et al.
MOLECULAR ECOLOGY (2019)
New mitochondrial primers for metabarcoding of insects, designed and evaluated using in silico methods
Daniel Marquina et al.
MOLECULAR ECOLOGY RESOURCES (2019)
Metabarcoding a diverse arthropod mock community
Thomas W. A. Braukmann et al.
MOLECULAR ECOLOGY RESOURCES (2019)
One-locus-several-primers: A strategy to improve the taxonomic and haplotypic coverage in diet metabarcoding studies
Emmanuel Corse et al.
ECOLOGY AND EVOLUTION (2019)
The menu varies with metabarcoding practices: A case study with the bat Plecotus auritus
Tommy Andriollo et al.
PLOS ONE (2019)
An improved method for utilizing high-throughput amplicon sequencing to determine the diets of insectivorous animals
Michelle A. Jusino et al.
MOLECULAR ECOLOGY RESOURCES (2019)
Promises and pitfalls of using high-throughput sequencing for diet analysis
Antton Alberdi et al.
MOLECULAR ECOLOGY RESOURCES (2019)
From feces to data: A metabarcoding method for analyzing consumed and available prey in a bird-insect food web
Seppo Rytkonen et al.
ECOLOGY AND EVOLUTION (2019)
Deciphering host-parasitoid interactions and parasitism rates of crop pests using DNA metabarcoding
Ahmadou Sow et al.
SCIENTIFIC REPORTS (2019)
Combining noninvasive genetics and a new mammalian sex-linked marker provides new tools to investigate population size, structure and individual behaviour: An application to bats
Diane Zarzoso-Lacoste et al.
MOLECULAR ECOLOGY RESOURCES (2018)
DNA sequencing to help identify crop pests and their natural enemies in agro-ecosystems: The case of the millet head miner Heliocheilus albipunctella (Lepidoptera: Noctuidae) in sub-Saharan Africa
Ahmadou Sow et al.
BIOLOGICAL CONTROL (2018)
Increasing the utility of barcode databases through high-throughput sequencing of amplicons from dried museum specimens, an example on parasitic hymenoptera (Braconidae)
Julien Haran et al.
BIOLOGICAL CONTROL (2018)
Incidence and taxonomic richness of mosquitoes in the diets of little brown and big brown bats
Amy K. Wray et al.
JOURNAL OF MAMMALOGY (2018)
Agriculture shapes the trophic niche of a bat preying on multiple pest arthropods across Europe: Evidence from DNA metabarcoding
Ostaizka Aizpurua et al.
MOLECULAR ECOLOGY (2018)
Using DNA metabarcoding for simultaneous inference of common vampire bat diet and population structure
Kristine Bohmann et al.
MOLECULAR ECOLOGY RESOURCES (2018)
Metabarcoding for the parallel identification of several hundred predators and their prey: Application to bat species diet analysis
Maxime Galan et al.
MOLECULAR ECOLOGY RESOURCES (2018)
Geoffroy's bat, Myotis emarginatus, preys preferentially on spiders in multistratified dense habitats: a study of foraging bats in the Mediterranean
Urtzi Goiti et al.
FOLIA ZOOLOGICA (2018)
Why the COI barcode should be the community DNA metabarcode for the metazoa
Carmelo Andujar et al.
MOLECULAR ECOLOGY (2018)
Coexistence of two sympatric cryptic bat species in French Guiana: insights from genetic, acoustic and ecological data
Ondine Filippi-Codaccioni et al.
BMC EVOLUTIONARY BIOLOGY (2018)
Determining diet from faeces: Selection of metabarcoding primers for the insectivore Pyrenean desman (Galemys pyrenaicus)
Amaiur Esnaola et al.
PLOS ONE (2018)
Table for five, please: Dietary partitioning in boreal bats
Eero J. Vesterinen et al.
ECOLOGY AND EVOLUTION (2018)
FROGS: Find, Rapidly, OTUs with Galaxy Solution
Frederic Escudie et al.
BIOINFORMATICS (2018)
Diet tracing in ecology: Method comparison and selection
Jens M. Nielsen et al.
METHODS IN ECOLOGY AND EVOLUTION (2018)
Scrutinizing key steps for reliable metabarcoding of environmental samples
Antton Alberdi et al.
METHODS IN ECOLOGY AND EVOLUTION (2018)
PrimerMiner: an r package for development and in silico validation of DNA metabarcoding primers
Vasco Elbrecht et al.
METHODS IN ECOLOGY AND EVOLUTION (2017)
A from-benchtop-to-desktop workflow for validating HTS data and for taxonomic identification in diet metabarcoding studies
Emmanuel Corse et al.
MOLECULAR ECOLOGY RESOURCES (2017)
Pellets of proof: First glimpse of the dietary composition of adult odonates as revealed by metabarcoding of feces
Kari M. Kaunisto et al.
ECOLOGY AND EVOLUTION (2017)
Chirosurveillance: The use of native bats to detect invasive agricultural pests
Brooke Maslo et al.
PLOS ONE (2017)
Molecular dietary analysis of the endangered Ozark big-eared bat (Corynorhinus townsendii ingens)
Ronald A. Van den Bussche et al.
ACTA CHIROPTEROLOGICA (2016)
Environmental DNA metabarcoding of lake fish communities reflects long-term data from established survey methods
Bernd Hanfling et al.
MOLECULAR ECOLOGY (2016)
Testing the potential of a ribosomal 16S marker for DNA metabarcoding of insects
Vasco Elbrecht et al.
PEERJ (2016)
VSEARCH: a versatile open source tool for metagenomics
Torbjorn Rognes et al.
PEERJ (2016)
16S rRNA Amplicon Sequencing for Epidemiological Surveys of Bacteria in Wildlife
Maxime Galan et al.
MSYSTEMS (2016)
Species From Feces: Order-Wide Identification of Chiroptera From Guano and Other Non-Invasive Genetic Samples
Faith M. Walker et al.
PLOS ONE (2016)
Trophic requirements beyond foraging habitats: The importance of prey source habitats in bat conservation
Aitor Arrizabalaga-Escudero et al.
BIOLOGICAL CONSERVATION (2015)
DNA metabarcoding of insects and allies: an evaluation of primers and pipelines
G. -J. Brandon-Mong et al.
BULLETIN OF ENTOMOLOGICAL RESEARCH (2015)
A new method to identify the endangered Pyrenean desman (Galemys pyrenaicus) and to study its diet, using next generation sequencing from faeces
Francois Gillet et al.
MAMMALIAN BIOLOGY (2015)
Molecular detection of invertebrate prey in vertebrate diets: trophic ecology of Caribbean island lizards
Tyler R. Kartzinel et al.
MOLECULAR ECOLOGY RESOURCES (2015)
Massively parallel multiplex DNA sequencing for specimen identification using an Illumina MiSeq platform
Shadi Shokralla et al.
SCIENTIFIC REPORTS (2015)
DNA metabarcoding and the cytochrome c oxidase subunit I marker: not a perfect match
Bruce E. Deagle et al.
BIOLOGY LETTERS (2014)
Molecular detection of trophic interactions: emerging trends, distinct advantages, significant considerations and conservation applications
Elizabeth L. Clare
EVOLUTIONARY APPLICATIONS (2014)
An inordinate fondness for beetles? Variation in seasonal dietary preferences of night-roosting big brown bats (Eptesicus fuscus)
Elizabeth L. Clare et al.
MOLECULAR ECOLOGY (2014)
The diet of Myotis lucifugus across Canada: assessing foraging quality and diet variability
Elizabeth L. Clare et al.
MOLECULAR ECOLOGY (2014)
Environmental metabarcodes for insects: in silico PCR reveals potential for taxonomic bias
Laurence J. Clarke et al.
MOLECULAR ECOLOGY RESOURCES (2014)
Comparison and Validation of Some ITS Primer Pairs Useful for Fungal Metabarcoding Studies
Michiel Op De Beeck et al.
PLOS ONE (2014)
Environmental DNA for wildlife biology and biodiversity monitoring
Kristine Bohmann et al.
TRENDS IN ECOLOGY & EVOLUTION (2014)
Swarm: robust and fast clustering method for amplicon-based studies
Frederic Mahe et al.
PEERJ (2014)
A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents
Matthieu Leray et al.
FRONTIERS IN ZOOLOGY (2013)
Fungal community analysis by high-throughput sequencing of amplified markers - a user's guide
Bjorn D. Lindahl et al.
NEW PHYTOLOGIST (2013)
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
Matthew Kearse et al.
BIOINFORMATICS (2012)
Who is eating what: diet assessment using next generation sequencing
Francois Pompanon et al.
MOLECULAR ECOLOGY (2012)
Environmental DNA
Pierre Taberlet et al.
MOLECULAR ECOLOGY (2012)
New environmental metabarcodes for analysing soil DNA: potential for studying past and present ecosystems
Laura S. Epp et al.
MOLECULAR ECOLOGY (2012)
Carnivore diet analysis based on next-generation sequencing: application to the leopard cat (Prionailurus bengalensis) in Pakistan
Wasim Shehzad et al.
MOLECULAR ECOLOGY (2012)
Towards next-generation biodiversity assessment using DNA metabarcoding
Pierre Taberlet et al.
MOLECULAR ECOLOGY (2012)
Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform
Martin Kircher et al.
NUCLEIC ACIDS RESEARCH (2012)
Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring
Douglas W. Yu et al.
METHODS IN ECOLOGY AND EVOLUTION (2012)
UCHIME improves sensitivity and speed of chimera detection
Robert C. Edgar et al.
BIOINFORMATICS (2011)
FLASH: fast length adjustment of short reads to improve genome assemblies
Tanja Magoc et al.
BIOINFORMATICS (2011)
Taxon-specific PCR for DNA barcoding arthropod prey in bat faeces
Matt R. K. Zeale et al.
MOLECULAR ECOLOGY RESOURCES (2011)
Molecular scatology: how to improve prey DNA detection success in avian faeces?
Johannes Oehm et al.
MOLECULAR ECOLOGY RESOURCES (2011)
ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis
Tiayyba Riaz et al.
NUCLEIC ACIDS RESEARCH (2011)
Molecular Diet Analysis of Two African Free-Tailed Bats (Molossidae) Using High Throughput Sequencing
Kristine Bohmann et al.
PLOS ONE (2011)
Species on the menu of a generalist predator, the eastern red bat (Lasiurus borealis): using a molecular approach to detect arthropod prey
Elizabeth L. Clare et al.
MOLECULAR ECOLOGY (2009)
Blocking primers to enhance PCR amplification of rare sequences in mixed samples - a case study on prey DNA in Antarctic krill stomachs
Hege Vestheim et al.
FRONTIERS IN ZOOLOGY (2008)
GenBank
Dennis A. Benson et al.
NUCLEIC ACIDS RESEARCH (2008)
A minimalist barcode can identify a specimen whose DNA is degraded
Mehrdad Hajibabaei et al.
MOLECULAR ECOLOGY NOTES (2006)
Biological identifications through DNA barcodes
PDN Hebert et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2003)
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
K Katoh et al.
NUCLEIC ACIDS RESEARCH (2002)
Evaluation of PCR-generated chimeras: Mutations, and heteroduplexes with 16S rRNA gene-based cloning
XY Qiu et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2001)