Related references
Note: Only part of the references are listed.Altered m6A Modification of Specific Cellular Transcripts Affects Flaviviridae Infection
Nandan S. Gokhale et al.
MOLECULAR CELL (2020)
Histone H3 trimethylation at lysine 36 guides m6A RNA modification co-transcriptionally
Huilin Huang et al.
NATURE (2019)
The R package Rsubread is easier, faster, cheaper and better for alignment and quantification of RNA sequencing reads
Yang Liao et al.
NUCLEIC ACIDS RESEARCH (2019)
The RNA N6-methyladenosine modification landscape of human fetal tissues
Shan Xiao et al.
NATURE CELL BIOLOGY (2019)
Deciphering the m6A Code via Antibody-Independent Quantitative Profiling
Miguel Angel Garcia-Campos et al.
CELL (2019)
Accurate detection of m6A RNA modifications in native RNA sequences
Huanle Liu et al.
NATURE COMMUNICATIONS (2019)
The m6A Writer: Rise of a Machine for Growing Tasks
Dario L. Balacco et al.
BIOCHEMISTRY (2019)
m6A modification controls the innate immune response to infection by targeting type I interferons
Roni Winkler et al.
NATURE IMMUNOLOGY (2019)
Pre-mRNA processing includes N6 methylation of adenosine residues that are retained in mRNA exons and the fallacy of RNA epigenetics
Robert R. Darnell et al.
RNA (2018)
Our views of dynamic N6-methyladenosine RNA methylation
Boxuan Simen Zhao et al.
RNA (2018)
Viral and cellular N6-methyladenosine and N6,2′-O-dimethyladenosine epitranscriptomes in the KSHV life cycle
Brandon Tan et al.
NATURE MICROBIOLOGY (2018)
R-2HG Exhibits Anti-tumor Activity by Targeting FTO/m6A/MYC/CEBPA Signaling
Rui Su et al.
CELL (2018)
FTO, m(6)A(m), and the hypothesis of reversible epitranscriptomic mRNA modifications
Jan Mauer et al.
FEBS LETTERS (2018)
MeTDiff: A Novel Differential RNA Methylation Analysis for MeRIP-Seq Data
Xiaodong Cui et al.
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS (2018)
N6-Methyladenosine Guides mRNA Alternative Translation during Integrated Stress Response
Jun Zhou et al.
MOLECULAR CELL (2018)
Zc3h13 Regulates Nuclear RNA m6A Methylation and Mouse Embryonic Stem Cell Self-Renewal
Jing Wen et al.
MOLECULAR CELL (2018)
Recognition of RNA N6- methyladenosine by IGF2BP proteins enhances mRNA stability and translation
Huilin Huang et al.
NATURE CELL BIOLOGY (2018)
Highly parallel direct RNA sequencing on an array of nanopores
Daniel R. Garalde et al.
NATURE METHODS (2018)
A potentially abundant junctional RNA motif stabilized by m6A and Mg2+
Bei Liu et al.
NATURE COMMUNICATIONS (2018)
N6-methyladenosine modification and the YTHDF2 reader protein play cell type specific roles in lytic viral gene expression during Kaposi's sarcoma-associated herpesvirus infection
Charles R. Hesser et al.
PLOS PATHOGENS (2018)
Differential m(6)A, m(6)A(m), and m(1)A Demethylation Mediated by FTO in the Cell Nucleus and Cytoplasm
Jiangbo Wei et al.
MOLECULAR CELL (2018)
The SMAD2/3 interactome reveals that TGFβ controls m6A mRNA methylation in pluripotency
Alessandro Bertero et al.
NATURE (2018)
m6A mRNA methylation regulates AKT activity to promote the proliferation and tumorigenicity of endometrial cancer
Jun Liu et al.
NATURE CELL BIOLOGY (2018)
The Role of m6A/m-RNA Methylation in Stress Response Regulation
Mareen Engel et al.
NEURON (2018)
N6-methyladenosine modification of hepatitis B virus RNA differentially regulates the viral life cycle
Hasan Imam et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
Refined RIP-seq protocol for epitranscriptome analysis with low input materials
Yong Zeng et al.
PLOS BIOLOGY (2018)
RNA m6A modification enzymes shape innate responses to DNA by regulating interferon β
Rosa M. Rubio et al.
GENES & DEVELOPMENT (2018)
Circadian Clock Regulation of Hepatic Lipid Metabolism by Modulation of m6A mRNA Methylation
Xiang Zhong et al.
CELL REPORTS (2018)
Ythdf2-mediated m6A mRNA clearance modulates neural development in mice
Miaomiao Li et al.
GENOME BIOLOGY (2018)
RNA m6A methylation participates in regulation of postnatal development of the mouse cerebellum
Chunhui Ma et al.
GENOME BIOLOGY (2018)
Dynamic m6A methylation facilitates mRNA triaging to stress granules
Maximilian Anders et al.
LIFE SCIENCE ALLIANCE (2018)
Reversible methylation of m6Am in the 5′ cap controls mRNA stability
Jan Mauer et al.
NATURE (2017)
Promoter-bound METTL3 maintains myeloid leukaemia by m6A-dependent translation control
Isaia Barbieri et al.
NATURE (2017)
The N6-methyladenosine (m6A)-forming enzyme METTL3 controls myeloid differentiation of normal hematopoietic and leukemia cells
Ly P. Vu et al.
NATURE MEDICINE (2017)
mRNA N6-methyladenosine methylation of postnatal liver development in pig
Shen He et al.
PLOS ONE (2017)
m6aViewer: software for the detection, analysis, and visualization of N6-methyladenosine peaks from m6A-seq/ME-RIP sequencing data
Agne Antanaviciute et al.
RNA (2017)
m6A RNA Methylation Regulates the Self-Renewal and Tumorigenesis of Glioblastoma Stem Cells
Qi Cui et al.
CELL REPORTS (2017)
Temporal Control of Mammalian Cortical Neurogenesis by m6A Methylation
Ki-Jun Yoon et al.
CELL (2017)
QNB: differential RNA methylation analysis for count-based small-sample sequencing data with a quad-negative binomial model
Lian Liu et al.
BMC BIOINFORMATICS (2017)
Dynamic RNA Modifications in Gene Expression Regulation
Ian A. Roundtree et al.
CELL (2017)
Transcriptome-wide N6-methyladenosine methylome profiling of porcine muscle and adipose tissues reveals a potential mechanism for transcriptional regulation and differential methylation pattern
Xuelian Tao et al.
BMC GENOMICS (2017)
FTO Plays an Oncogenic Role in Acute Myeloid Leukemia as a N6-Methyladenosine RNA Demethylase
Zejuan Li et al.
CANCER CELL (2017)
A novel algorithm for calling mRNA m6A peaks by modeling biological variances in MeRIP-seq data
Xiaodong Cui et al.
BIOINFORMATICS (2016)
Complex heatmaps reveal patterns and correlations in multidimensional genomic data
Zuguang Gu et al.
BIOINFORMATICS (2016)
Dynamics of Human and Viral RNA Methylation during Zika Virus Infection
Gianluigi Lichinchi et al.
CELL HOST & MICROBE (2016)
N6-Methyladenosine in Flaviviridae Viral RNA Genomes Regulates Infection
Nandan S. Gokhale et al.
CELL HOST & MICROBE (2016)
The m6A Methyltransferase METTL3 Promotes Translation in Human Cancer Cells
Shuibin Lin et al.
MOLECULAR CELL (2016)
Near-optimal probabilistic RNA-seq quantification
Nicolas L. Bray et al.
NATURE BIOTECHNOLOGY (2016)
m6A-LAIC-seq reveals the census and complexity of the m6A epitranscriptome
Benoit Molinie et al.
NATURE METHODS (2016)
g:Profiler-a web server for functional interpretation of gene lists (2016 update)
Juri Reimand et al.
NUCLEIC ACIDS RESEARCH (2016)
How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use?
Nicholas J. Schurch et al.
RNA (2016)
N6-methyladenosine of HIV-1 RNA regulates viral infection and HIV-1 Gag protein expression
Nagaraja Tirumuru et al.
ELIFE (2016)
A survey of best practices for RNA-seq data analysis
Ana Conesa et al.
GENOME BIOLOGY (2016)
5′ UTR m6A Promotes Cap-Independent Translation
Kate D. Meyer et al.
CELL (2015)
N6-methyladenosine Modulates Messenger RNA Translation Efficiency
Xiao Wang et al.
CELL (2015)
m6A RNA Methylation Is Regulated by MicroRNAs and Promotes Reprogramming to Pluripotency
Tong Chen et al.
CELL STEM CELL (2015)
Coordination of m6A mRNA Methylation and Gene Transcription by ZFP217 Regulates Pluripotency and Reprogramming
Francesca Aguilo et al.
CELL STEM CELL (2015)
A majority of m6A residues are in the last exons, allowing the potential for 3′ UTR regulation
Shengdong Ke et al.
GENES & DEVELOPMENT (2015)
Dynamic m6A mRNA methylation directs translational control of heat shock response
Jun Zhou et al.
NATURE (2015)
Single-nucleotide-resolution mapping of m6A and m6Am throughout the transcriptome
Bastian Linder et al.
NATURE METHODS (2015)
m6A mRNA methylation facilitates resolution of naive pluripotency toward differentiation
Shay Geula et al.
SCIENCE (2015)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
FTO-dependent demethylation of N6-methyladenosine regulates mRNA splicing and is required for adipogenesis
Xu Zhao et al.
CELL RESEARCH (2014)
m6A RNA Modification Controls Cell Fate Transition in Mammalian Embryonic Stem Cells
Pedro J. Batista et al.
CELL STEM CELL (2014)
Musashi-2 controls cell fate, lineage bias, and TGF-β signaling in HSCs
Sun-Mi Park et al.
JOURNAL OF EXPERIMENTAL MEDICINE (2014)
A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium
Zhenqiang Su et al.
NATURE BIOTECHNOLOGY (2014)
N6-methyladenosine modification destabilizes developmental regulators in embryonic stem cells
Yang Wang et al.
NATURE CELL BIOLOGY (2014)
A protocol for RNA methylation differential analysis with MeRIP-Seq data and exomePeak R/Bioconductor package
Jia Meng et al.
METHODS (2014)
Perturbation of m6A Writers Reveals Two Distinct Classes of mRNA Methylation at Internal and 5′ Sites
Schraga Schwartz et al.
CELL REPORTS (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin et al.
BIOINFORMATICS (2013)
RNA-Methylation-Dependent RNA Processing Controls the Speed of the Circadian Clock
Jean-Michel Fustin et al.
CELL (2013)
ALKBH5 Is a Mammalian RNA Demethylase that Impacts RNA Metabolism and Mouse Fertility
Guanqun Zheng et al.
MOLECULAR CELL (2013)
The fat mass and obesity associated gene (Fto) regulates activity of the dopaminergic midbrain circuitry
Martin E. Hess et al.
NATURE NEUROSCIENCE (2013)
Probing N6-methyladenosine RNA modification status at single nucleotide resolution in mRNA and long noncoding RNA
Nian Liu et al.
RNA (2013)
Comprehensive Analysis of mRNA Methylation Reveals Enrichment in 3′ UTRs and near Stop Codons
Kate D. Meyer et al.
CELL (2012)
Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq
Dan Dominissini et al.
NATURE (2012)
The birth of the Epitranscriptome: deciphering the function of RNA modifications
Yogesh Saletore et al.
GENOME BIOLOGY (2012)
N6-Methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO
Guifang Jia et al.
NATURE CHEMICAL BIOLOGY (2011)
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
Mark D. Robinson et al.
BIOINFORMATICS (2010)
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
BIOINFORMATICS (2010)
RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
John C. Marioni et al.
GENOME RESEARCH (2008)
Model-based Analysis of ChIP-Seq (MACS)
Yong Zhang et al.
GENOME BIOLOGY (2008)