Related references
Note: Only part of the references are listed.Metabolic Implications of Using BioOrthogonal Non-Canonical Amino Acid Tagging (BONCAT) for Tracking Protein Synthesis
Katherine F. Steward et al.
FRONTIERS IN MICROBIOLOGY (2020)
Assessment of stability and fluctuations of cultured lower airway bacterial communities in people with cystic fibrosis
Laura J. Sherrard et al.
JOURNAL OF CYSTIC FIBROSIS (2019)
Long-Term Transcriptional Activity at Zero Growth of a Cosmopolitan Rare Biosphere Member
Bela Hausmann et al.
MBIO (2019)
Probing the active fraction of soil microbiomes using BONCAT-FACS
Estelle Couradeau et al.
NATURE COMMUNICATIONS (2019)
Deciphering the Ecology of Cystic Fibrosis Bacterial Communities: Towards Systems-Level Integration
Annamaria Bevivino et al.
TRENDS IN MOLECULAR MEDICINE (2019)
Interrogating marine virus-host interactions and elemental transfer with BONCAT and nanoSIMS-based methods
Alexis L. Pasulka et al.
ENVIRONMENTAL MICROBIOLOGY (2018)
Good cop, bad cop: anaerobes in cystic fibrosis airways
Lindsay J. Caverly et al.
EUROPEAN RESPIRATORY JOURNAL (2018)
Fluctuations in airway bacterial communities associated with clinical states and disease stages in cystic fibrosis
Lisa A. Carmody et al.
PLOS ONE (2018)
Initial acquisition and succession of the cystic fibrosis lung microbiome is associated with disease progression in infants and preschool children
Marianne S. Muhlebach et al.
PLOS PATHOGENS (2018)
Microbial rRNA Synthesis and Growth Compared through Quantitative Stable Isotope Probing with H2 18O
Katerina Papp et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2018)
Refining the Application of Microbial Lipids as Tracers of Staphylococcus aureus Growth Rates in Cystic Fibrosis Sputum
Cajetan Neubauer et al.
JOURNAL OF BACTERIOLOGY (2018)
Profiling of Bacterial and Fungal Microbial Communities in Cystic Fibrosis Sputum Using RNA
Nora Grahl et al.
MSPHERE (2018)
Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data
Nicole M. Davis et al.
MICROBIOME (2018)
Pseudomonas aeruginosa exoproducts determine antibiotic efficacy against Staphylococcus aureus
Lauren Radlinski et al.
PLOS BIOLOGY (2017)
Using Click-Chemistry for Visualizing in Situ Changes of Translational Activity in Planktonic Marine Bacteria
Ainara Leizeaga et al.
FRONTIERS IN MICROBIOLOGY (2017)
Longitudinal sampling of the lung microbiota in individuals with cystic fibrosis
Fiona J. Whelan et al.
PLOS ONE (2017)
Simulated rRNA/DNA Ratios Show Potential To Misclassify Active Populations as Dormant
Blaire Steven et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2017)
Trace incorporation of heavy water reveals slow and heterogeneous pathogen growth rates in cystic fibrosis sputum
Sebastian H. Kopf et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studies
Daryl M. Gohl et al.
NATURE BIOTECHNOLOGY (2016)
DADA2: High-resolution sample inference from Illumina amplicon data
Benjamin J. Callahan et al.
NATURE METHODS (2016)
SutA is a bacterial transcription factor expressed during slow growth in Pseudomonas aeruginosa
Brett M. Babin et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Visualizing in situ translational activity for identifying and sorting slow-growing archaeal-bacterial consortia
Roland Hatzenpichler et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Exposing the Three-Dimensional Biogeography and Metabolic States of Pathogens in Cystic Fibrosis Sputum via Hydrogel Embedding, Clearing, and rRNA Labeling
William H. DePas et al.
MBIO (2016)
Reduction in Pseudomonas aeruginosa sputum density during a cystic fibrosis pulmonary exacerbation does not predict clinical response
John C. Lam et al.
BMC INFECTIOUS DISEASES (2015)
In vivo imaging and tracking of host-microbiota interactions via metabolic labeling of gut anaerobic bacteria
Naama Geva-Zatorsky et al.
NATURE MEDICINE (2015)
Cystic fibrosis lung microbiome: Opportunities to reconsider management of airway infection
Lindsay J. Caverly et al.
PEDIATRIC PULMONOLOGY (2015)
Pediatric Cystic Fibrosis Sputum Can Be Chemically Dynamic, Anoxic, and Extremely Reduced Due to Hydrogen Sulfide Formation
Elise S. Cowley et al.
MBIO (2015)
Selective enrichment of mycobacterial proteins from infected host macrophages
Ajit G. Chande et al.
SCIENTIFIC REPORTS (2015)
Cystic Fibrosis Lung Infections: Polymicrobial, Complex, and Hard to Treat
Laura M. Filkins et al.
PLOS PATHOGENS (2015)
The daily dynamics of cystic fibrosis airway microbiota during clinical stability and at exacerbation
Lisa A. Carmody et al.
MICROBIOME (2015)
In situ visualization of newly synthesized proteins in environmental microbes using amino acid tagging and click chemistry
Roland Hatzenpichler et al.
ENVIRONMENTAL MICROBIOLOGY (2014)
Polymorphonuclear Leukocytes Restrict Growth of Pseudomonas aeruginosa in the Lungs of Cystic Fibrosis Patients
Kasper N. Kragh et al.
INFECTION AND IMMUNITY (2014)
Metabolite transfer with the fermentation product 2,3-butanediol enhances virulence by Pseudomonas aeruginosa
Arvind Venkataraman et al.
ISME JOURNAL (2014)
Quantitative, Time-Resolved Proteomic Analysis by Combining Bioorthogonal Noncanonical Amino Acid Tagging and Pulsed Stable Isotope Labeling by Amino Acids in Cell Culture
John D. Bagert et al.
MOLECULAR & CELLULAR PROTEOMICS (2014)
The SILVA and All-species Living Tree Project (LTP) taxonomic frameworks
Pelin Yilmaz et al.
NUCLEIC ACIDS RESEARCH (2014)
Identification of secreted bacterial proteins by noncanonical amino acid tagging
Alborz Mahdavi et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Cystic Fibrosis Therapy: A Community Ecology Perspective
Douglas Conrad et al.
AMERICAN JOURNAL OF RESPIRATORY CELL AND MOLECULAR BIOLOGY (2013)
Changing thresholds and incidence of antibiotic treatment of cystic fibrosis pulmonary exacerbations, 1995-2005
Donald R. VanDevanter et al.
JOURNAL OF CYSTIC FIBROSIS (2013)
Molecular analysis of changes in Pseudomonas aeruginosa load during treatment of a pulmonary exacerbation in cystic fibrosis
D. W. Reid et al.
JOURNAL OF CYSTIC FIBROSIS (2013)
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
Christian Quast et al.
NUCLEIC ACIDS RESEARCH (2013)
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
Paul J. McMurdie et al.
PLOS ONE (2013)
Community surveillance enhances Pseudomonas aeruginosa virulence during polymicrobial infection
Aishwarya Korgaonkar et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Unique microbial communities persist in individual cystic fibrosis patients throughout a clinical exacerbation
Katherine E. Price et al.
MICROBIOME (2013)
Fiji: an open-source platform for biological-image analysis
Johannes Schindelin et al.
NATURE METHODS (2012)
The Adult Cystic Fibrosis Airway Microbiota Is Stable over Time and Infection Type, and Highly Resilient to Antibiotic Treatment of Exacerbations
Anthony A. Fodor et al.
PLOS ONE (2012)
Long-term cultivation-independent microbial diversity analysis demonstrates that bacterial communities infecting the adult cystic fibrosis lung show stability and resilience
Franziska Anne Stressmann et al.
THORAX (2012)
phangorn: phylogenetic analysis in R
Klaus Peter Schliep
BIOINFORMATICS (2011)
Does bacterial density in cystic fibrosis sputum increase prior to pulmonary exacerbation?
Franziska A. Stressmann et al.
JOURNAL OF CYSTIC FIBROSIS (2011)
High Abundance of Ammonia-Oxidizing Archaea in Coastal Waters, Determined Using a Modified DNA Extraction Method
Hidetoshi Urakawa et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2010)
Relationship between cystic fibrosis respiratory tract bacterial communities and age, genotype, antibiotics and Pseudomonas aeruginosa
Vanja Klepac-Ceraj et al.
ENVIRONMENTAL MICROBIOLOGY (2010)
A 'rare biosphere' microorganism contributes to sulfate reduction in a peatland
Michael Pester et al.
ISME JOURNAL (2010)
Airway Microbiota and Pathogen Abundance in Age-Stratified Cystic Fibrosis Patients
Michael J. Cox et al.
PLOS ONE (2010)
Stochastic switching as a survival strategy in fluctuating environments
Murat Acar et al.
NATURE GENETICS (2008)
A polymicrobial perspective of pulmonary infections exposes an enigmatic pathogen in cystic fibrosis patients
Christopher D. Sibley et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
In situ growth rates and biofilm development of Pseudomonas aeruginosa populations in chronic lung infections
Lei Yang et al.
JOURNAL OF BACTERIOLOGY (2008)
Molecular identification of bacteria in bronchoalveolar lavage fluid from children with cystic fibrosis
J. Kirk Harris et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
Qiong Wang et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)
Selection for Staphylococcus aureus small-colony variants due to growth in the presence of Pseudomonas aeruginosa
Lucas R. Hoffman et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Cystic fibrosis sputum supports growth and cues key aspects of Pseudomonas aeruginosa physiology
KL Palmer et al.
JOURNAL OF BACTERIOLOGY (2005)
Bacterial activity in cystic fibrosis lung infections
GB Rogers et al.
RESPIRATORY RESEARCH (2005)
A strain-promoted [3+2] azide-alkyne cycloaddition for covalent modification of blomolecules in living systems
NJ Agard et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2004)
Characterization of bacterial community diversity in cystic fibrosis lung infections by use of 16S ribosomal DNA terminal restriction fragment length polymorphism profiling
GB Rogers et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2004)
Modulation of Pseudomonas aeruginosa gene expression by host microflora through interspecies communication
KM Duan et al.
MOLECULAR MICROBIOLOGY (2003)
Genetic identification of a respiratory arsenate reductase
CW Saltikov et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Incorporation of azides into recombinant proteins for chemoselective modification by the Staudinger ligation
KL Kiick et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
Characterization of a Rothia-like organism from a mouse:: description of Rothia nasimurium sp nov and reclassification of Stomatococcus mucilaginosus as Rothia mucilaginosa comb. nov.
MD Collins et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2000)