4.6 Article

Thiazole Orange Dimers in DNA: Fluorescent Base Substitutions with Hybridization Readout

Related references

Note: Only part of the references are listed.
Article Biochemical Research Methods

PNA FIT-Probes for the Dual Color Imaging of Two Viral mRNA Targets in Influenza H1N1 Infected Live Cells

Susann Kummer et al.

BIOCONJUGATE CHEMISTRY (2012)

Article Chemistry, Multidisciplinary

Imaging beyond the proteome

Pamela V. Chang et al.

CHEMICAL COMMUNICATIONS (2012)

Review Chemistry, Multidisciplinary

DNA-Multichromophore Systems

Yin Nah Teo et al.

CHEMICAL REVIEWS (2012)

Article Chemistry, Multidisciplinary

Reversed Assembly of Dyes in an RNA Duplex Compared with Those in DNA

Taiga Fujii et al.

CHEMISTRY-A EUROPEAN JOURNAL (2012)

Article Biochemistry & Molecular Biology

Chemical structure requirements and cellular targeting of microRNA-122 by peptide nucleic acids anti-miRs

Adrian G. Torres et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Chemistry, Multidisciplinary

In-Stem-Labeled Molecular Beacons for Distinct Fluorescent Color Readout

Carolin Holzhauser et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2011)

Article Chemistry, Multidisciplinary

Fluorescence Imaging of Influenza H1N1 mRNA in Living Infected Cells Using Single-Chromophore FIT-PNA

Susann Kummer et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2011)

Review Chemistry, Multidisciplinary

DNA as supramolecular scaffold for functional molecules: progress in DNA nanotechnology

Thomas J. Bandy et al.

CHEMICAL SOCIETY REVIEWS (2011)

Review Chemistry, Multidisciplinary

ECHO probes: a concept of fluorescence control for practical nucleic acid sensing

Akimitsu Okamoto

CHEMICAL SOCIETY REVIEWS (2011)

Review Biochemistry & Molecular Biology

Imaging of RNA in live cells

Bruce A. Armitage

CURRENT OPINION IN CHEMICAL BIOLOGY (2011)

Review Chemistry, Multidisciplinary

Nucleic acid-guided assembly of aromatic chromophores

Vladimir L. Malinovskii et al.

CHEMICAL SOCIETY REVIEWS (2010)

Article Chemistry, Organic

Synthesis and Optical Properties of Cyanine Dyes as Fluorescent DNA Base Substitutions for Live Cell Imaging

Carolin Holzhauser et al.

EUROPEAN JOURNAL OF ORGANIC CHEMISTRY (2010)

Article Chemistry, Multidisciplinary

Glowing Locked Nucleic Acids: Brightly Fluorescent Probes for Detection of Nucleic Acids in Cells

Michael E. Ostergaard et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2010)

Article Chemistry, Organic

Imaging of RNA delivery to cells by thiazole orange as a fluorescent RNA base substitution

Sina Berndl et al.

ORGANIC & BIOMOLECULAR CHEMISTRY (2010)

Article Chemistry, Multidisciplinary

In-Stem Molecular Beacon Containing a Pseudo Base Pair of Threoninol Nucleotides for the Removal of Background Emission

Hiromu Kashida et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2009)

Article Chemistry, Multidisciplinary

Exciton-Controlled Hybridization-Sensitive Fluorescent Probes: Multicolor Detection of Nucleic Acids

Shuji Ikeda et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2009)

Article Chemistry, Multidisciplinary

Fluorescent Color Readout of DNA Hybridization with Thiazole Orange as an Artificial DNA Base

Sina Berndl et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2009)

Article Biochemical Research Methods

Hybridization-Sensitive Fluorescent Probe for Long-Term Monitoring of Intracellular RNA

Takeshi Kubota et al.

BIOCONJUGATE CHEMISTRY (2009)

Article Chemistry, Multidisciplinary

Perylene bisimide dimers as fluorescent Glue for DNA and for base-mismatch detection

Daniela Baumstark et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2008)

Article Biochemistry & Molecular Biology

Hybridization-dependent fluorescence of oligodeoxynucleotides incorporating new pyrene-modified adenosine residues

Kohji Seio et al.

BIOORGANIC & MEDICINAL CHEMISTRY (2008)

Article Biochemistry & Molecular Biology

Light-switching excimer beacon assays for ribonuclease H kinetic study

Yan Chen et al.

CHEMBIOCHEM (2008)

Article Chemistry, Organic

Thiazole orange and Cy3: Improvement of fluorescent DNA probes with use of short range electron transfer

Florian Menacher et al.

JOURNAL OF ORGANIC CHEMISTRY (2008)

Review Chemistry, Multidisciplinary

Charge-transfer and spin dynamics in DNA hairpin conjugates with perylenediimide as a base-pair surrogate

Tarek A. Zeidan et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2008)

Article Chemistry, Multidisciplinary

Pyrene excimer signaling molecular beacons for probing nucleic acids

Patrick Conlon et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2008)

Article Chemistry, Medicinal

Cyanine dye conjugates as probes for live cell imaging

Jay R. Carreon et al.

BIOORGANIC & MEDICINAL CHEMISTRY LETTERS (2007)

Article Chemistry, Multidisciplinary

Monomeric and heterodimeric triple helical DNA mimics

Ivan Trkulja et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2007)

Article Chemistry, Multidisciplinary

Exploring base-pair-specific optical properties of the DNA stain thiazole orange

Dilip Venkatrao Jarikote et al.

CHEMISTRY-A EUROPEAN JOURNAL (2007)

Article Chemistry, Multidisciplinary

Structure-fluorescence contrast relationship in cyanine DNA intercalators: Toward rational dye design

Alexandre Fuerstenberg et al.

CHEMISTRY-A EUROPEAN JOURNAL (2007)

Article Chemistry, Multidisciplinary

Helical arrangement of interstrand stacked pyrenes in a DNA framework

Vladimir L. Malinovskii et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2007)

Article Biochemistry & Molecular Biology

Targeting DNA mismatches with rhodium intercalators functionalized with a cell-penetrating peptide

Jens Brunner et al.

BIOCHEMISTRY (2006)

Article Chemistry, Organic

Perylene-3,4:9,10-tetracarboxylic acid bisimide dye as an artificial DNA base surrogate

Clemens Wagner et al.

ORGANIC LETTERS (2006)

Article Chemistry, Multidisciplinary

Ultrafast excited-state dynamics of DNA fluorescent intercalators:: New insight into the fluorescence enhancement mechanism

Alexandre Fuerstenberg et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2006)

Article Biochemistry & Molecular Biology

Tunable DNA cleavage by intercalating peptidoconjugates

Kerry P. Mahon et al.

CHEMBIOCHEM (2006)

Article Chemistry, Multidisciplinary

Large dynamic stokes shift of DNA intercalation dye thiazole orange has contribution from a high-frequency mode

V Karunakaran et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2006)

Article Chemistry, Multidisciplinary

New cyanine-oligonucleotide conjugates: Relationships between chemical structures and properties

R Lartia et al.

CHEMISTRY-A EUROPEAN JOURNAL (2006)

Article Chemistry, Organic

Detection of terminal mismatches on DNA duplexes with fluorescent oligonucleotides

U Asseline et al.

ORGANIC & BIOMOLECULAR CHEMISTRY (2006)

Article Chemistry, Multidisciplinary

Insertion of two pyrene moieties into oligodeoxyribonucleotides for the efficient detection of deletion polymorphisms

Hiromu Kashida et al.

CHEMICAL COMMUNICATIONS (2006)

Article Chemistry, Multidisciplinary

Fluorescent H-aggregates of merocyanine dyes

Ulrich Roesch et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2006)

Article Biochemistry & Molecular Biology

Combinatorial fluorescence energy transfer molecular beacons for probing nucleic acid sequences

Xiaoxu Li et al.

PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES (2006)

Article Chemistry, Physical

Ultrafast energy transfer and structural dynamics in DNA

A Trifonov et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2005)

Article Chemistry, Organic

Divergent and linear solid-phase synthesis of PNA containing thiazole orange as artificial base

DV Jarikote et al.

EUROPEAN JOURNAL OF ORGANIC CHEMISTRY (2005)

Article Chemistry, Multidisciplinary

Polyacrylamide gel film immobilized molecular beacon array for single nucleotide mismatch detection

YJ Wang et al.

JOURNAL OF NANOSCIENCE AND NANOTECHNOLOGY (2005)

Article Chemistry, Multidisciplinary

Duplex and hairpin dimer structures for perylene diimide-oligonucleotide conjugates

Y Zheng et al.

CHEMICAL COMMUNICATIONS (2005)

Article Chemistry, Multidisciplinary

Phototoxicity of peptidoconjugates modulated by a single amino acid

LM Wittenhagen et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2005)

Article Chemistry, Multidisciplinary

DNA mismatch detection using a pyrene-excimer-forming probe

K Yamana et al.

CHEMICAL COMMUNICATIONS (2005)

Article Chemistry, Organic

Thiazole orange-peptide conjugates: Sensitivity of DNA binding to chemical structure

JR Carreon et al.

ORGANIC LETTERS (2004)

Review Biochemistry & Molecular Biology

Molecular beacons

WH Tan et al.

CURRENT OPINION IN CHEMICAL BIOLOGY (2004)

Article Chemistry, Organic

Unambiguous detection of target DNAs by excimer-monomer switching molecular beacons

K Fujimoto et al.

JOURNAL OF ORGANIC CHEMISTRY (2004)

Article Chemistry, Multidisciplinary

Thiazole orange as fluorescent universal base in peptide nucleic acids

O Kohler et al.

CHEMICAL COMMUNICATIONS (2003)

Article Biochemistry & Molecular Biology

Structure-function relationships of shared-stem and conventional molecular beacons

A Tsourkas et al.

NUCLEIC ACIDS RESEARCH (2002)

Article Chemistry, Physical

Aggregation of thiacyanine derivatives on polyelectrolytes

C Peyratout et al.

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2002)

Article Chemistry, Multidisciplinary

Free-probe fluorescence of light-up probes

N Svanvik et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2001)

Review Chemistry, Multidisciplinary

Cyanines during the 1990s: A review

A Mishra et al.

CHEMICAL REVIEWS (2000)

Article Spectroscopy

Interaction of cyanine dyes with nucleic acids. XVII. Towards an aggregation of cyanine dyes in solutions as a factor facilitating nucleic acid detection

TY Ogul'chansky et al.

SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY (2000)