Related references
Note: Only part of the references are listed.Sinorhizobium meliloti YbeY is a zinc-dependent single-strand specific endoribonuclease that plays an important role in 16S ribosomal RNA processing
Vignesh M. P. Babu et al.
NUCLEIC ACIDS RESEARCH (2020)
The RNase YbeY Is Vital for Ribosome Maturation, Stress Resistance, and Virulence of the Natural Genetic Engineer Agrobacterium tumefaciens
Philip Moeller et al.
JOURNAL OF BACTERIOLOGY (2019)
The yeast protein Mam33 functions in the assembly of the mitochondrial ribosome
Gabrielle A. Hillman et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2019)
Interactive Tree Of Life (iTOL) v4: recent updates and new developments
Ivica Letunic et al.
NUCLEIC ACIDS RESEARCH (2019)
Role of Era in assembly and homeostasis of the ribosomal small subunit
Aida Razi et al.
NUCLEIC ACIDS RESEARCH (2019)
Mitoribosomal small subunit biogenesis in trypanosomes involves an extensive assembly machinery
Martin Saurer et al.
SCIENCE (2019)
Identification of flavonoids as regulators of YbeY activity in Liberibacter asiaticus
Ran Zuo et al.
ENVIRONMENTAL MICROBIOLOGY (2019)
Structure of Human Mitochondrial Translation Initiation Factor 3 Bound to the Small Ribosomal Subunit
Ravi K. Koripella et al.
ISCIENCE (2019)
Small is big in Arabidopsis mitochondrial ribosome
Florent Waltz et al.
NATURE PLANTS (2019)
Yeast Mitoribosome Large Subunit Assembly Proceeds by Hierarchical Incorporation of Protein Clusters and Modules on the Inner Membrane
Rui Zeng et al.
CELL METABOLISM (2018)
Endoribonuclease YbeY Is Linked to Proper Cellular Morphology and Virulence in Brucella abortus
James A. Budnick et al.
JOURNAL OF BACTERIOLOGY (2018)
Elevated Levels of Era GTPase Improve Growth, 16S rRNA Processing, and 70S Ribosome Assembly of Escherichia coli Lacking Highly Conserved Multifunctional YbeY Endoribonuclease
Anubrata Ghosal et al.
JOURNAL OF BACTERIOLOGY (2018)
Ribosome maturation by the endoribonuclease YbeY stabilizes a type 3 secretion system transcript required for virulence of enterohemorrhagic Escherichia coli
Sean P. McAteer et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2018)
Revising the Structural Diversity of Ribosomal Proteins Across the Three Domains of Life
Sergey Melnikov et al.
MOLECULAR BIOLOGY AND EVOLUTION (2018)
The essential nature of YqfG, a YbeY homologue required for 3′ maturation of Bacillus subtilis 16S ribosomal RNA is suppressed by deletion of RNase R
Kathrin Baumgardt et al.
NUCLEIC ACIDS RESEARCH (2018)
Eukaryote specific folds: Part of the whole
Anni Kauko et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2018)
Kinetics and Mechanism of Mammalian Mitochondrial Ribosome Assembly
Daniel F. Bogenhagen et al.
CELL REPORTS (2018)
Concerted regulation of mitochondrial and nuclear non-coding RNAs by a dual-targeted RNase Z
Stefan J. Siira et al.
EMBO REPORTS (2018)
Acid bone lysate activates TGFβ signalling in human oral fibroblasts
Franz Josef Strauss et al.
SCIENTIFIC REPORTS (2018)
Sinorhizobium meliloti YbeY is an endoribonuclease with unprecedented catalytic features, acting as silencing enzyme in riboregulation
Margarida Saramago et al.
NUCLEIC ACIDS RESEARCH (2017)
A homozygous missense mutation in ERAL1, encoding a mitochondrial rRNA chaperone, causes Perrault syndrome
Iliana A. Chatzispyrou et al.
HUMAN MOLECULAR GENETICS (2017)
The ATPase Fap7 Tests the Ability to Carry Out Translocation-like Conformational Changes and Releases Dim1 during 40S Ribosome Maturation (vol 67, pg 990, 2017)
Homa Ghalei et al.
MOLECULAR CELL (2017)
Regulation of Mammalian Mitochondrial Gene Expression: Recent Advances
Sarah F. Pearce et al.
TRENDS IN BIOCHEMICAL SCIENCES (2017)
p32 heterozygosity protects against age- and diet-induced obesity by increasing energy expenditure
Yong Liu et al.
SCIENTIFIC REPORTS (2017)
Neural-specific deletion of mitochondrial p32/C1qbp leads to leukoencephalopathy due to undifferentiated oligodendrocyte and axon degeneration
Mikako Yagi et al.
SCIENTIFIC REPORTS (2017)
Biallelic C1QBP Mutations Cause Severe Neonatal-, Childhood-, or Later-Onset Cardiomyopathy Associated with Combined Respiratory-Chain Deficiencies
Rene G. Feichtinger et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2017)
Discovery of new RNA classes and global RNA-binding proteins
Alexandre Smirnov et al.
CURRENT OPINION IN MICROBIOLOGY (2017)
Cardiomyocyte-specific loss of mitochondrial p32/C1qbp causes cardiomyopathy and activates stress responses
Toshiro Saito et al.
CARDIOVASCULAR RESEARCH (2017)
C21orf57 is a human homologue of bacterial YbeY proteins
Anubrata Ghosal et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2017)
The Assembly Pathway of Mitochondrial Respiratory Chain Complex I
Sergio Guerrero-Castillo et al.
CELL METABOLISM (2017)
MitoCarta2.0: an updated inventory of mammalian mitochondrial proteins
Sarah E. Calvo et al.
NUCLEIC ACIDS RESEARCH (2016)
Integrated genome browser: visual analytics platform for genomics
Nowlan H. Freese et al.
BIOINFORMATICS (2016)
A Genome-wide CRISPR Death Screen Identifies Genes Essential for Oxidative Phosphorylation
Jason D. Arroyo et al.
Cell Metabolism (2016)
Melanoma addiction to the long non-coding RNA SAMMSON
Eleonora Leucci et al.
NATURE (2016)
Grad-seq guides the discovery of ProQ as a major small RNA-binding protein
Alexandre Smirnov et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Identification of YbeY-Protein Interactions Involved in 16S rRNA Maturation and Stress Regulation in Escherichia coli
Maarten Vercruysse et al.
MBIO (2016)
The ATPase hCINAP regulates 18S rRNA processing and is essential for embryogenesis and tumour growth
Dongmei Bai et al.
Nature Communications (2016)
The Spectrum of Mitochondrial Ultrastructural Defects in Mitochondrial Myopathy
Amy E. Vincent et al.
SCIENTIFIC REPORTS (2016)
Hierarchical RNA Processing Is Required for Mitochondrial Ribosome Assembly
Oliver Rackham et al.
CELL REPORTS (2016)
Prefabrication of a ribosomal protein subcomplex essential for eukaryotic ribosome formation
Cohue Pena et al.
ELIFE (2016)
Mitochondrial ribosome assembly in health and disease
Dasmanthie De Silva et al.
CELL CYCLE (2015)
Absence of YbeY RNase compromises the growth and enhances the virulence plasmid gene expression of Yersinia enterocolitica O:3
Katarzyna Leskinen et al.
MICROBIOLOGY-SGM (2015)
MitoFates: Improved Prediction of Mitochondrial Targeting Sequences and Their Cleavage Sites
Yoshinori Fukasawa et al.
MOLECULAR & CELLULAR PROTEOMICS (2015)
The Conserved Endoribonuclease YbeY Is Required for Chloroplast Ribosomal RNA Processing in Arabidopsis
Jinwen Liu et al.
PLANT PHYSIOLOGY (2015)
Purification of mRNA-programmed translation initiation complexes suitable for mass spectrometry analysis
Johana Chicher et al.
PROTEOMICS (2015)
The complete structure of the 55S mammalian mitochondrial ribosome
Basil J. Greber et al.
SCIENCE (2015)
The structure of the human mitochondrial ribosome
Alexey Amunts et al.
SCIENCE (2015)
The Human Mitochondrial DEAD-Box Protein DDX28 Resides in RNA Granules and Functions in Mitoribosome Assembly
Ya-Ting Tu et al.
CELL REPORTS (2015)
Mitochondrial RNA Granules Are Centers for Posttranscriptional RNA Processing and Ribosome Biogenesis
Hana Antonicka et al.
CELL REPORTS (2015)
Assessment of EGFR/HER2 dimerization by FRET-FLIM utilizing Alexa-conjugated secondary antibodies in relation to targeted therapies in cancers
Benjamin R. Waterhouse et al.
Oncotarget (2015)
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
Yang Liao et al.
BIOINFORMATICS (2014)
The role of ribonucleases in regulating global mRNA levels in the model organism Thermus thermophilus HB8
Hiromasa Ohyama et al.
BMC GENOMICS (2014)
Central role for RNase YbeY in Hfq-dependent and Hfq-independent small-RNA regulation in bacteria
Shree P. Pandey et al.
BMC GENOMICS (2014)
Initial Steps in RNA Processing and Ribosome Assembly Occur at Mitochondrial DNA Nucleoids
Daniel F. Bogenhagen et al.
CELL METABOLISM (2014)
Segmentation and quantification of subcellular structures in fluorescence microscopy images using Squassh
Aurelien Rizk et al.
NATURE PROTOCOLS (2014)
Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome
Prem S. Kaushal et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Structure of the large ribosomal subunit from human mitochondria
Alan Brown et al.
SCIENCE (2014)
RNA Mimicry by the Fap7 Adenylate Kinase in Ribosome Biogenesis
Jerome Loc'h et al.
PLOS BIOLOGY (2014)
The Highly Conserved Bacterial RNase YbeY Is Essential in Vibrio cholerae, Playing a Critical Role in Virulence, Stress Regulation, and RNA Processing
Maarten Vercruysse et al.
PLOS PATHOGENS (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
p32 protein levels are integral to mitochondrial and endoplasmic reticulum morphology, cell metabolism and survival
MengJie Hu et al.
BIOCHEMICAL JOURNAL (2013)
GRSF1 Regulates RNA Processing in Mitochondrial RNA Granules
Alexis A. Jourdain et al.
CELL METABOLISM (2013)
Conserved Bacterial RNase YbeY Plays Key Roles in 70S Ribosome Quality Control and 16S rRNA Maturation
Asha Ivy Jacob et al.
MOLECULAR CELL (2013)
Image-based transcriptomics in thousands of single human cells at single-molecule resolution
Nico Battich et al.
NATURE METHODS (2013)
Essential ribosome assembly factor Fap7 regulates a hierarchy of RNA-protein interactions during small ribosomal subunit biogenesis
Ute A. Hellmich et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Multiplex Genome Engineering Using CRISPR/Cas Systems
Le Cong et al.
SCIENCE (2013)
Antibody-based Protein Profiling of the Human Chromosome 21
Mathias Uhlen et al.
MOLECULAR & CELLULAR PROTEOMICS (2012)
Fiji: an open-source platform for biological-image analysis
Johannes Schindelin et al.
NATURE METHODS (2012)
NIH Image to ImageJ: 25 years of image analysis
Caroline A. Schneider et al.
NATURE METHODS (2012)
Template-based protein structure modeling using the RaptorX web server
Morten Kaellberg et al.
NATURE PROTOCOLS (2012)
p32/gC1qR is indispensable for fetal development and mitochondrial translation: importance of its RNA-binding ability
Mikako Yagi et al.
NUCLEIC ACIDS RESEARCH (2012)
Assembly of Bacterial Ribosomes
Zahra Shajani et al.
ANNUAL REVIEW OF BIOCHEMISTRY, VOL 80 (2011)
Contacts between mammalian mitochondrial translational initiation factor 3 and ribosomal proteins in the small subunit
Md. Emdadul Haque et al.
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS (2011)
The mitochondrial protein C1qbp promotes cell proliferation, migration and resistance to cell death
Allison M. McGee et al.
CELL CYCLE (2011)
Biological significance of 5S rRNA import into human mitochondria: role of ribosomal protein MRP-L18
Alexandre Smirnov et al.
GENES & DEVELOPMENT (2011)
A highly conserved protein of unknown function in Sinorhizobium meliloti affects sRNA regulation similar to Hfq
Shree P. Pandey et al.
NUCLEIC ACIDS RESEARCH (2011)
Involvement of human ELAC2 gene product in 3′ end processing of mitochondrial tRNAs
Lien K. Brzezniak et al.
RNA BIOLOGY (2011)
Human ERAL1 is a mitochondrial RNA chaperone involved in the assembly of the 28S small mitochondrial ribosomal subunit
Sven Dennerlein et al.
BIOCHEMICAL JOURNAL (2010)
Human mitochondrial mRNAs-like members of all families, similar but different
Richard J. Temperley et al.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS (2010)
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
BIOINFORMATICS (2010)
The Heat Shock Protein YbeY Is Required for Optimal Activity of the 30S Ribosomal Subunit
Aviram Rasouly et al.
JOURNAL OF BACTERIOLOGY (2010)
Mitochondrial p32 Protein Is a Critical Regulator of Tumor Metabolism via Maintenance of Oxidative Phosphorylation
Valentina Fogal et al.
MOLECULAR AND CELLULAR BIOLOGY (2010)
Role of Escherichia coli YbeY, a highly conserved protein, in rRNA processing
Bryan W. Davies et al.
MOLECULAR MICROBIOLOGY (2010)
ERAL1 is associated with mitochondrial ribosome and elimination of ERAL1 leads to mitochondrial dysfunction and growth retardation
Takeshi Uchiumi et al.
NUCLEIC ACIDS RESEARCH (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Deconstructing ribosome construction
Keith Connolly et al.
TRENDS IN BIOCHEMICAL SCIENCES (2009)
Fast Mapping of Short Sequences with Mismatches, Insertions and Deletions Using Index Structures
Steve Hoffmann et al.
PLOS COMPUTATIONAL BIOLOGY (2009)
RNase P without RNA: Identification and Functional Reconstitution of the Human Mitochondrial tRNA Processing Enzyme
Johann Holzmann et al.
CELL (2008)
Isolated cytochrome c oxidase deficiency as a cause of MELAS
W. Rossmanith et al.
JOURNAL OF MEDICAL GENETICS (2008)
A highly conserved protein of unknown function is required by Sinorhizobium meliloti for symbiosis and environmental stress protection
Bryan W. Davies et al.
JOURNAL OF BACTERIOLOGY (2008)
COBALT: constraint-based alignment tool for multiple protein sequences
Jason S. Papadopoulos et al.
BIOINFORMATICS (2007)
Locating proteins in the cell using TargetP, SignalP and related tools
Olof Emanuelsson et al.
NATURE PROTOCOLS (2007)
Statistical analysis of membrane proteome expression changes in Saccharomyces cerevisiae
Boris Zybailov et al.
JOURNAL OF PROTEOME RESEARCH (2006)
Determination of the core of a minimal bacterial gene set
R Gil et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2004)
Detection and quantification of mitochondrial DNA deletions in individual cells by real-time PCR
LP He et al.
NUCLEIC ACIDS RESEARCH (2002)
Imaging protein-protein interactions using fluorescence resonance energy transfer microscopy
AK Kenworthy
METHODS (2001)
Predicting subcellular localization of proteins based on their N-terminal amino acid sequence
O Emanuelsson et al.
JOURNAL OF MOLECULAR BIOLOGY (2000)