4.6 Article

Deep ensemble learning for Alzheimer's disease classification

Journal

JOURNAL OF BIOMEDICAL INFORMATICS
Volume 105, Issue -, Pages -

Publisher

ACADEMIC PRESS INC ELSEVIER SCIENCE
DOI: 10.1016/j.jbi.2020.103411

Keywords

Deep learning; Ensemble learning; Stacking; Classification; Alzheimer's disease

Funding

  1. National Key R&D Program of China [2018YFB1003204]
  2. Anhui Provincial Key Technologies RD Program [1804b06020378, 1704e1002221]
  3. CAMS Initiative for Innovative Medicine (CAMS-I2M) [2016-I2M-1004]
  4. Guangdong Basic and Applied Basic Research Foundation [2020A1515011499]
  5. NIA/NIH [U01 AG016976]
  6. NIA [P30 AG019610, P30 AG013846, P50 AG008702, P50 AG025688, P50 AG047266, P30 AG010133, P50 AG005146, P50 AG005134, P50 AG016574, P50 AG005138, P30 AG008051]
  7. [P30 AG013854]
  8. [P30 AG008017]
  9. [P30 AG010161]
  10. [P50 AG047366]
  11. [P30 AG010129]
  12. [P50 AG016573]
  13. [P50 AG005131]
  14. [P50 AG023501]
  15. [P30 AG035982]
  16. [P30 AG028383]
  17. [P30 AG053760]
  18. [P30 AG010124]
  19. [P50 AG005133]
  20. [P50 AG005142]
  21. [P30 AG012300]
  22. [P50 AG005136]
  23. [P50 AG033514]
  24. [P50 AG005681]
  25. [P50 AG047270]
  26. [P30 AG049638]

Ask authors/readers for more resources

Ensemble learning uses multiple algorithms to obtain better predictive performance than any single one of its constituent algorithms could. With the growing popularity of deep learning technologies, researchers have started to ensemble these technologies for various purposes. Few, if any, however, have used the deep learning approach as a means to ensemble Alzheimer's disease classification algorithms. This paper presents a deep ensemble learning framework that aims to harness deep learning algorithms to integrate multisource data and tap the 'wisdom of experts'. At the voting layer, two sparse autoencoders are trained for feature learning to reduce the correlation of attributes and diversify the base classifiers ultimately. At the stacking layer, a nonlinear feature-weighted method based on a deep belief network is proposed to rank the base classifiers, which may violate the conditional independence. The neural network is used as a meta classifier. At the optimizing layer, over-sampling and threshold-moving are used to cope with the cost-sensitive problem. Optimized predictions are obtained based on an ensemble of probabilistic predictions by similarity calculation. The proposed deep ensemble learning framework is used for Alzheimer's disease classification. Experiments with the clinical dataset from National Alzheimer's Coordinating Center demonstrate that the classification accuracy of our proposed framework is 4% better than six well-known ensemble approaches, including the standard stacking algorithm as well. Adequate coverage of more accurate diagnostic services can be provided by utilizing the wisdom of averaged physicians. This paper points out a new way to boost the primary care of Alzheimer's disease from the view of machine learning.

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