4.5 Article

Genome-wide analysis of short interspersed nuclear elements provides insight into gene and genome evolution in citrus

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

Novel Genes, Ancient Genes, and Gene Co-Option Contributed o the Genetic Basis of the Radula, a Molluscan Innovation

Leon Hilgers et al.

MOLECULAR BIOLOGY AND EVOLUTION (2018)

Article Biochemistry & Molecular Biology

Genome of Wild Mandarin and Domestication History of Mandarin

Lun Wang et al.

MOLECULAR PLANT (2018)

Article Multidisciplinary Sciences

Evidence for convergent evolution of SINE-directed Staufen-mediated mRNA decay

Bronwyn A. Lucas et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)

Article Multidisciplinary Sciences

A DNA methylation reader complex that enhances gene transcription

C. Jake Harris et al.

SCIENCE (2018)

Article Multidisciplinary Sciences

Dynamics of genome size evolution in birds and mammals

Aurelie Kapusta et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)

Article Biochemical Research Methods

systemPipeR: NGS workflow and report generation environment

Tyler W. H. Backman et al.

BMC BIOINFORMATICS (2016)

Article Biochemistry & Molecular Biology

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

Sudhir Kumar et al.

MOLECULAR BIOLOGY AND EVOLUTION (2016)

Article Multidisciplinary Sciences

SINE transcription by RNA polymerase III is suppressed by histone methylation but not by DNA methylation

Dhaval Varshney et al.

NATURE COMMUNICATIONS (2015)

Article Genetics & Heredity

Transposable Elements Contribute to Activation of Maize Genes in Response to Abiotic Stress

Irina Makarevitch et al.

PLOS GENETICS (2015)

Article Genetics & Heredity

Comparison of inter- and intraspecies variation in humans and fruit flies

Juliann Shih et al.

GENOMICS DATA (2015)

Article Genetics & Heredity

The draft genome of sweet orange (Citrus sinensis)

Qiang Xu et al.

NATURE GENETICS (2013)

Article Biochemical Research Methods

Software for Computing and Annotating Genomic Ranges

Michael Lawrence et al.

PLOS COMPUTATIONAL BIOLOGY (2013)

Review Genetics & Heredity

Active Transposition in Genomes

Cheng Ran Lisa Huang et al.

ANNUAL REVIEW OF GENETICS, VOL 46 (2012)

Article Evolutionary Biology

Genome Size and Transposable Element Content as Determined by High-Throughput Sequencing in Maize and Zea luxurians

Maud I. Tenaillon et al.

GENOME BIOLOGY AND EVOLUTION (2011)

Article Multidisciplinary Sciences

Selfish genetic elements, genetic conflict, and evolutionary innovation

John H. Werren

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Biochemical Research Methods

BEDTools: a flexible suite of utilities for comparing genomic features

Aaron R. Quinlan et al.

BIOINFORMATICS (2010)

Review Cell Biology

Genomic gems: SINE RNAs regulate mRNA production

Steven L. Ponicsan et al.

CURRENT OPINION IN GENETICS & DEVELOPMENT (2010)

Article Biochemistry & Molecular Biology

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

Manolo Gouy et al.

MOLECULAR BIOLOGY AND EVOLUTION (2010)

Article Biochemical Research Methods

BLAST plus : architecture and applications

Christiam Camacho et al.

BMC BIOINFORMATICS (2009)

Article Biochemistry & Molecular Biology

Circos: An information aesthetic for comparative genomics

Martin Krzywinski et al.

GENOME RESEARCH (2009)

Article Multidisciplinary Sciences

Rapid DNA loss as a counterbalance to genome expansion through retrotransposon proliferation in plants

Jennifer S. Hawkins et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Biochemistry & Molecular Biology

Human Alu RNA is a modular transacting repressor of mRNA transcription during heat shock

Peter D. Mariner et al.

MOLECULAR CELL (2008)

Article Multidisciplinary Sciences

Genome-wide B1 retrotransposon binds the transcription factors dioxin receptor and Slug and regulates gene expression in vivo

Angel Carlos Roman et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Review Genetics & Heredity

A unified classification system for eukaryotic transposable elements

Thomas Wicker et al.

NATURE REVIEWS GENETICS (2007)

Article Multidisciplinary Sciences

Transposition of the rice miniature inverted repeat transposable element mPing in Arabidopsis thaliana

Guojun Yang et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Review Multidisciplinary Sciences

Phenotypic plasticity and the epigenetics of human disease

Andrew P. Feinberg

NATURE (2007)

Article Biochemistry & Molecular Biology

Maintenance of DNA methylation during the Arabidopsis life cycle is essential for parental imprinting

Pauline E. Jullien et al.

PLANT CELL (2006)

Article Biochemistry & Molecular Biology

Evolutionary diversity and potential recombinogenic role of integration targets of non-LTR retrotransposons

AJ Gentles et al.

MOLECULAR BIOLOGY AND EVOLUTION (2005)

Article Biochemical Research Methods

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

RC Edgar

BMC BIOINFORMATICS (2004)

Article Biochemistry & Molecular Biology

WebLogo: A sequence logo generator

GE Crooks et al.

GENOME RESEARCH (2004)

Article Biochemistry & Molecular Biology

A novel class of SINE elements derived from 5S rRNA

VV Kapitonov et al.

MOLECULAR BIOLOGY AND EVOLUTION (2003)

Article Biochemistry & Molecular Biology

Active alu element A-tails,: Size does matter

AM Roy-Engel et al.

GENOME RESEARCH (2002)

Article Biochemistry & Molecular Biology

Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis

KM Devos et al.

GENOME RESEARCH (2002)

Review Genetics & Heredity

Alu repeats and human genomic diversity

MA Batzer et al.

NATURE REVIEWS GENETICS (2002)

Article Evolutionary Biology

MapChart: Software for the graphical presentation of linkage maps and QTLs

RE Voorrips

JOURNAL OF HEREDITY (2002)

Article Multidisciplinary Sciences

Recent, extensive, and preferential insertion of members of the miniature inverted-repeat transposable element family Heartbreaker into genic regions of maize

Q Zhang et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)