4.7 Article

Configuration of active site segments in lytic polysaccharide monooxygenases steers oxidative xyloglucan degradation

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

ModelTest-NG: A New and Scalable Tool for the Selection of DNA and Protein Evolutionary Models

Diego Darriba et al.

MOLECULAR BIOLOGY AND EVOLUTION (2020)

Article Biochemistry & Molecular Biology

Ribose-Map: a bioinformatics toolkit to map ribonucleotides embedded in genomic DNA

Alli L. Gombolay et al.

NUCLEIC ACIDS RESEARCH (2019)

Review Biotechnology & Applied Microbiology

On the functional characterization of lytic polysaccharide monooxygenases (LPMOs)

Vincent G. H. Eijsink et al.

BIOTECHNOLOGY FOR BIOFUELS (2019)

Article Biochemical Research Methods

RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference

Alexey M. Kozlov et al.

BIOINFORMATICS (2019)

Article Biochemistry & Molecular Biology

Influence of Lytic Polysaccharide Monooxygenase Active Site Segments on Activity and Affinity

Christophe V. F. P. Laurent et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2019)

Article Biochemistry & Molecular Biology

SWISS-MODEL: homology modelling of protein structures and complexes

Andrew Waterhouse et al.

NUCLEIC ACIDS RESEARCH (2018)

Article Biochemistry & Molecular Biology

Structure of a lytic polysaccharide monooxygenase from Aspergillus fumigatus and an engineered thermostable variant

Leila Lo Leggio et al.

CARBOHYDRATE RESEARCH (2018)

Article Biotechnology & Applied Microbiology

Quantification of the catalytic performance of C1-cellulose-specific lytic polysaccharide monooxygenases

Matthias Frommhagen et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2018)

Article Biochemistry & Molecular Biology

The SWISS-MODEL Repository-new features and functionality

Stefan Bienert et al.

NUCLEIC ACIDS RESEARCH (2017)

Article Multidisciplinary Sciences

Modeling protein quaternary structure of homo- and hetero-oligomers beyond binary interactions by homology

Martino Bertoni et al.

SCIENTIFIC REPORTS (2017)

Article Biotechnology & Applied Microbiology

The yeast Geotrichum candidum encodes functional lytic polysaccharide monooxygenases

Simon Ladeveze et al.

BIOTECHNOLOGY FOR BIOFUELS (2017)

Article Biochemistry & Molecular Biology

A bioinformatics analysis of 3400 lytic polysaccharide oxidases from family AA9

Nicolas Lenfant et al.

CARBOHYDRATE RESEARCH (2017)

Article Biochemistry & Molecular Biology

The Role of the Secondary Coordination Sphere in a Fungal Polysaccharide Monooxygenase

Elise A. Span et al.

ACS CHEMICAL BIOLOGY (2017)

Article Biotechnology & Applied Microbiology

Salt-responsive lytic polysaccharide monooxygenases from the mangrove fungus Pestalotiopsis sp NCi6

Ilabahen Patel et al.

BIOTECHNOLOGY FOR BIOFUELS (2016)

Article Biotechnology & Applied Microbiology

Lytic polysaccharide monooxygenases from Myceliophthora thermophila C1 differ in substrate preference and reducing agent specificity

Matthias Frommhagen et al.

BIOTECHNOLOGY FOR BIOFUELS (2016)

Article Biochemistry & Molecular Biology

FgLPMO9A from Fusarium graminearum cleaves xyloglucan independently of the backbone substitution pattern

Laura Nekiunaite et al.

FEBS LETTERS (2016)

Article Biochemistry & Molecular Biology

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

Sudhir Kumar et al.

MOLECULAR BIOLOGY AND EVOLUTION (2016)

Article Multidisciplinary Sciences

Interactions of a fungal lytic polysaccharide monooxygenase with β-glucan substrates and cellobiose dehydrogenase

Gaston Courtade et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Article Multidisciplinary Sciences

Light-driven oxidation of polysaccharides by photosynthetic pigments and a metalloenzyme

D. Cannella et al.

NATURE COMMUNICATIONS (2016)

Article Biotechnology & Applied Microbiology

Discovery of the combined oxidative cleavage of plant xylan and cellulose by a new fungal polysaccharide monooxygenase

Matthias Frommhagen et al.

BIOTECHNOLOGY FOR BIOFUELS (2015)

Article Biotechnology & Applied Microbiology

Substrate specificity and regioselectivity of fungal AA9 lytic polysaccharide monooxygenases secreted by Podospora anserina

Chloe Bennati-Granier et al.

BIOTECHNOLOGY FOR BIOFUELS (2015)

Article Biochemistry & Molecular Biology

Structural and Functional Characterization of a Lytic Polysaccharide Monooxygenase with Broad Substrate Specificity

Anna S. Borisova et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2015)

Review Biotechnology & Applied Microbiology

Lytic Polysaccharide Monooxygenases in Biomass Conversion

Glyn R. Hemsworth et al.

TRENDS IN BIOTECHNOLOGY (2015)

Article Chemistry, Multidisciplinary

Determinants of Regioselective Hydroxylation in the Fungal Polysaccharide Monooxygenases

Van V. Vu et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2014)

Article Biochemistry & Molecular Biology

The carbohydrate-active enzymes database (CAZy) in 2013

Vincent Lombard et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Multidisciplinary Sciences

Structural and functional characterization of a conserved pair of bacterial cellulose-oxidizing lytic polysaccharide monooxygenases

Zarah Forsberg et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Multidisciplinary Sciences

Discovery of LPMO activity on hemicelluloses shows the importance of oxidative processes in plant cell wall degradation

Jane W. Agger et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Biotechnology & Applied Microbiology

Production of four Neurospora crassa lytic polysaccharide monooxygenases in Pichia pastoris monitored by a fluorimetric assay

Roman Kittl et al.

BIOTECHNOLOGY FOR BIOFUELS (2012)

Review Biotechnology & Applied Microbiology

Novel enzymes for the degradation of cellulose

Svein Jarle Horn et al.

BIOTECHNOLOGY FOR BIOFUELS (2012)

Article Chemistry, Multidisciplinary

Oxidative Cleavage of Cellulose by Fungal Copper-Dependent Polysaccharide Monooxygenases

William T. Beeson et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2012)

Article Biochemical Research Methods

HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment

Michael Remmert et al.

NATURE METHODS (2012)

Review Plant Sciences

Xyloglucan and its biosynthesis

Olga A. Zabotina

FRONTIERS IN PLANT SCIENCE (2012)

Article Biochemical Research Methods

Toward the estimation of the absolute quality of individual protein structure models

Pascal Benkert et al.

BIOINFORMATICS (2011)

Article Biochemical Research Methods

How Many Bootstrap Replicates Are Necessary?

Nicholas D. Pattengale et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2010)

Article Multidisciplinary Sciences

An Oxidative Enzyme Boosting the Enzymatic Conversion of Recalcitrant Polysaccharides

Gustav Vaaje-Kolstad et al.

SCIENCE (2010)

Article Biochemical Research Methods

BLAST plus : architecture and applications

Christiam Camacho et al.

BMC BIOINFORMATICS (2009)

Review Biochemistry & Molecular Biology

The structure, function, and biosynthesis of plant cell wall pectic polysaccharides

Kerry Hosmer Caffall et al.

CARBOHYDRATE RESEARCH (2009)

Review Plant Sciences

Unique aspects of the grass cell wall

John Vogel

CURRENT OPINION IN PLANT BIOLOGY (2008)

Article Biochemistry & Molecular Biology

The First Structure of a Glycoside Hydrolase Family 61 Member, Cel61B from Hypocrea jecorina, at 1.6 Å Resolution

Saeid Karkehabadi et al.

JOURNAL OF MOLECULAR BIOLOGY (2008)

Article Biochemistry & Molecular Biology

An investigation of the substrate specificity of the xyloglucanase Cel74A from Hypocrea jecorina

Tom Desmet et al.

FEBS JOURNAL (2007)

Article Biochemistry & Molecular Biology

Crystal structures of Clostridium thermocellum xyloglucanase, XGH74A, reveal the structural basis for xyloglucan recognition and degradation

Carlos Martinez-Fleites et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2006)

Review Multidisciplinary Sciences

The path forward for biofuels and biomaterials

AJ Ragauskas et al.

SCIENCE (2006)

Review Cell Biology

Growth of the plant cell wall

DJ Cosgrove

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2005)

Article Biochemistry & Molecular Biology

Structural analysis of xyloglucans in the primary cell walls of plants in the subclass Asteridae

M Hoffman et al.

CARBOHYDRATE RESEARCH (2005)

Article Biochemistry & Molecular Biology

MUSCLE: multiple sequence alignment with high accuracy and high throughput

RC Edgar

NUCLEIC ACIDS RESEARCH (2004)

Article Biochemical Research Methods

A transition probability model for amino acid substitutions from blocks

S Veerassamy et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2003)