4.7 Article

Apollo: a sequencing-technology-independent, scalable and accurate assembly polishing algorithm

Related references

Note: Only part of the references are listed.
Article Biochemical Research Methods

Shouji: a fast and efficient pre-alignment filter for sequence alignment

Mohammed Alser et al.

BIOINFORMATICS (2019)

Article Biotechnology & Applied Microbiology

Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome

Aaron M. Wenger et al.

NATURE BIOTECHNOLOGY (2019)

Article Biochemical Research Methods

Minimap2: pairwise alignment for nucleotide sequences

Heng Li

BIOINFORMATICS (2018)

Article Biotechnology & Applied Microbiology

GRIM-Filter: Fast seed location filtering in DNA read mapping using processing-in-memory technologies

Jeremie S. Kim et al.

BMC GENOMICS (2018)

Article Biotechnology & Applied Microbiology

Nanopore sequencing and assembly of a human genome with ultra-long reads

Miten Jain et al.

NATURE BIOTECHNOLOGY (2018)

Article Biochemistry & Molecular Biology

Fast and accurate de novo genome assembly from long uncorrected reads

Robert Vaser et al.

GENOME RESEARCH (2017)

Article Biochemistry & Molecular Biology

Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation

Sergey Koren et al.

GENOME RESEARCH (2017)

Article Engineering, Electrical & Electronic

Building and Improving Reference Genome Assemblies

Karyn Meltz Steinberg et al.

PROCEEDINGS OF THE IEEE (2017)

Article Biochemical Research Methods

GateKeeper: a new hardware architecture for accelerating pre-alignment in DNA short read mapping

Mohammed Alser et al.

BIOINFORMATICS (2017)

Article Biochemical Research Methods

On genomic repeats and reproducibility

Can Firtina et al.

BIOINFORMATICS (2016)

Article Biochemical Research Methods

Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences

Heng Li

BIOINFORMATICS (2016)

Article Biotechnology & Applied Microbiology

Assembling large genomes with single-molecule sequencing and locality-sensitive hashing

Konstantin Berlin et al.

NATURE BIOTECHNOLOGY (2015)

Article Biochemical Research Methods

A complete bacterial genome assembled de novo using only nanopore sequencing data

Nicholas J. Loman et al.

NATURE METHODS (2015)

Review Genetics & Heredity

APPLICATIONS OF NEXT-GENERATION SEQUENCING Genetic variation and the de novo assembly of human genomes

Mark J. P. Chaisson et al.

NATURE REVIEWS GENETICS (2015)

Review Genetics & Heredity

PacBio Sequencing and Its Applications

Anthony Rhoads et al.

GENOMICS PROTEOMICS & BIOINFORMATICS (2015)

Article Biochemical Research Methods

LoRDEC: accurate and efficient long read error correction

Leena Salmela et al.

BIOINFORMATICS (2014)

Article Biochemistry & Molecular Biology

Reconstructing complex regions of genomes using long-read sequencing technology

John Huddleston et al.

GENOME RESEARCH (2014)

Article Biochemical Research Methods

QUAST: quality assessment tool for genome assemblies

Alexey Gurevich et al.

BIOINFORMATICS (2013)

Article Biochemical Research Methods

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

Chen-Shan Chin et al.

NATURE METHODS (2013)

Article Biotechnology & Applied Microbiology

Accelerating read mapping with FastHASH

Hongyi Xin et al.

BMC GENOMICS (2013)

Article Biotechnology & Applied Microbiology

Hybrid error correction and de novo assembly of single-molecule sequencing reads

Sergey Koren et al.

NATURE BIOTECHNOLOGY (2012)

Article Multidisciplinary Sciences

Improving PacBio Long Read Accuracy by Short Read Alignment

Kin Fai Au et al.

PLOS ONE (2012)

Review Biochemistry & Molecular Biology

Field guide to next-generation DNA sequencers

Travis C. Glenn

MOLECULAR ECOLOGY RESOURCES (2011)

Article Biochemical Research Methods

Limitations of next-generation genome sequence assembly

Can Alkan et al.

NATURE METHODS (2011)

Article Biochemical Research Methods

Accelerated Profile HMM Searches

Sean R. Eddy

PLOS COMPUTATIONAL BIOLOGY (2011)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

Fast and accurate short read alignment with Burrows-Wheeler transform

Heng Li et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

SeqAn An efficient, generic C++ library for sequence analysis

Andreas Doering et al.

BMC BIOINFORMATICS (2008)

Article Biochemical Research Methods

Fragment assembly with short reads

M Chaisson et al.

BIOINFORMATICS (2004)

Article Biotechnology & Applied Microbiology

Versatile and open software for comparing large genomes

S Kurtz et al.

GENOME BIOLOGY (2004)