4.7 Article

A systems biology approach reveals neuronal and muscle developmental defects after chronic exposure to ionising radiation in zebrafish

Related references

Note: Only part of the references are listed.
Article Multidisciplinary Sciences

Emergence of consistent intra-individual locomotor patterns during zebrafish development

Jennifer A. Fitzgerald et al.

SCIENTIFIC REPORTS (2019)

Article Biochemistry & Molecular Biology

New approach for understanding genome variations in KEGG

Minoru Kanehisa et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Biochemistry & Molecular Biology

PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools

Huaiyu Mi et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Biochemistry & Molecular Biology

InterPro in 2019: improving coverage, classification and access to protein sequence annotations

Alex L. Mitchell et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Biochemistry & Molecular Biology

The Encyclopedia of DNA elements (ENCODE): data portal update

Carrie A. Davis et al.

NUCLEIC ACIDS RESEARCH (2018)

Article Biochemistry & Molecular Biology

Ensembl 2018

Daniel R. Zerbino et al.

NUCLEIC ACIDS RESEARCH (2018)

Article Biochemistry & Molecular Biology

JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework

Aziz Khan et al.

NUCLEIC ACIDS RESEARCH (2018)

Article Biology

zHSF1 modulates zper2 expression in zebrafish embryos

Lucas Mennetrier et al.

CHRONOBIOLOGY INTERNATIONAL (2018)

Article Multidisciplinary Sciences

Benchmarking of RNA-sequencing analysis workflows using wholetranscriptome RT-qPCR expression data

Celine Everaert et al.

SCIENTIFIC REPORTS (2017)

Article Biochemical Research Methods

ImageJ2: ImageJ for the next generation of scientific image data

Curtis T. Rueden et al.

BMC BIOINFORMATICS (2017)

Editorial Material Developmental Biology

HeRBi: Helmholtz Repository of Bioparts

Uwe Straehle et al.

ZEBRAFISH (2016)

Article Multidisciplinary Sciences

Gamma radiation at a human relevant low dose rate is genotoxic in mice

Anne Graupner et al.

SCIENTIFIC REPORTS (2016)

Article Marine & Freshwater Biology

External gamma irradiation-induced effects in early-life stages of zebrafish, Danio rerio

B. Gagnaire et al.

AQUATIC TOXICOLOGY (2015)

Article Biotechnology & Applied Microbiology

Loss of function of myosin chaperones triggers Hsf1-mediated transcriptional response in skeletal muscle cells

Christelle Etard et al.

GENOME BIOLOGY (2015)

Article Biotechnology & Applied Microbiology

Gene transcription in the zebrafish embryo: regulators and networks

Marco Ferg et al.

BRIEFINGS IN FUNCTIONAL GENOMICS (2014)

Article Biotechnology & Applied Microbiology

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love et al.

GENOME BIOLOGY (2014)

Article Biochemical Research Methods

STAR: ultrafast universal RNA-seq aligner

Alexander Dobin et al.

BIOINFORMATICS (2013)

Article Biochemistry & Molecular Biology

Integrated Analysis of Transcriptomic and Proteomic Data

Saad Haider et al.

CURRENT GENOMICS (2013)

Article Developmental Biology

Genome-wide, whole mount in situ analysis of transcriptional regulators in zebrafish embryos

Olivier Armant et al.

DEVELOPMENTAL BIOLOGY (2013)

Article Biochemistry & Molecular Biology

ZFIN, the Zebrafish Model Organism Database: increased support for mutants and transgenics

Douglas G. Howe et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Biochemical Research Methods

Software for Computing and Annotating Genomic Ranges

Michael Lawrence et al.

PLOS COMPUTATIONAL BIOLOGY (2013)

Article Biochemistry & Molecular Biology

Deep Brain Photoreceptors Control Light-Seeking Behavior in Zebrafish Larvae

Antonio M. Fernandes et al.

CURRENT BIOLOGY (2012)

Article Biotechnology & Applied Microbiology

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

Guangchuang Yu et al.

OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY (2012)

Article Multidisciplinary Sciences

Analysis of her1 and her7 Mutants Reveals a Spatio Temporal Separation of the Somite Clock Module

Suma Choorapoikayil et al.

PLOS ONE (2012)

Article Genetics & Heredity

oPOSSUM-3: Advanced Analysis of Regulatory Motif Over-Representation Across Genes or ChIP-Seq Datasets

Andrew T. Kwon et al.

G3-GENES GENOMES GENETICS (2012)

Editorial Material Engineering, Environmental

Fukushima Wildlife Dose Reconstruction Signals Ecological Consequences

Jacqueline Garnier-Laplace et al.

ENVIRONMENTAL SCIENCE & TECHNOLOGY (2011)

Review Environmental Sciences

Behavioural ecotoxicology, an early warning signal to assess environmental quality

Jocelyne Hellou

ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH (2011)

Article Environmental Sciences

GENOTOXICITY OF ACUTE AND CHRONIC GAMMA-IRRADIATION ON ZEBRAFISH CELLS AND CONSEQUENCES FOR EMBRYO DEVELOPMENT

Sandrine Pereira et al.

ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY (2011)

Article Multidisciplinary Sciences

Chernobyl Birds Have Smaller Brains

Anders Pape Moller et al.

PLOS ONE (2011)

Article Environmental Sciences

ADVERSE OUTCOME PATHWAYS: A CONCEPTUAL FRAMEWORK TO SUPPORT ECOTOXICOLOGY RESEARCH AND RISK ASSESSMENT

Gerald T. Ankley et al.

ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY (2010)

Article Biochemistry & Molecular Biology

Her4 is necessary for establishing peripheral projections of the trigeminal ganglia in zebrafish

Ju-Hoon So et al.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2009)

Article Biochemical Research Methods

Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt

Steffen Durinck et al.

NATURE PROTOCOLS (2009)

Review Neurosciences

Circuits controlling vertebrate locomotion: moving in a new direction

Martyn Goulding

NATURE REVIEWS NEUROSCIENCE (2009)

Article Neurosciences

Locomotion in larval zebrafish: Influence of time of day, lighting and ethanol

R. C. MacPhail et al.

NEUROTOXICOLOGY (2009)

Article Neurosciences

Embryonic motor activity and implications for regulating motoneuron axonal pathfinding in zebrafish

Evdokia Menelaou et al.

EUROPEAN JOURNAL OF NEUROSCIENCE (2008)

Article Biochemistry & Molecular Biology

Ontogenetic changes in the toxicity and efficacy of the anaesthetic MS222 (tricaine methanesulfonate) in zebrafish (Danio rerio) larvae

Peter J. Rombough

COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY (2007)

Review Neurosciences

Retinoic acid in the development, regeneration and maintenance of the nervous system

Malcolm Maden

NATURE REVIEWS NEUROSCIENCE (2007)

Article Biochemical Research Methods

Analysis of promoter regions of co-expressed genes identified by microarray analysis

Srinivas Veerla et al.

BMC BIOINFORMATICS (2006)

Article Biochemistry & Molecular Biology

DNA damage response and Ku80 function in the vertebrate embryo

CL Bladen et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Environmental Sciences

Exposure to chronic, low-dose rate gamma-radiation at chornobyl does not induce point mutations in Big Blue (R) mice

JK Wickliffe et al.

ENVIRONMENTAL AND MOLECULAR MUTAGENESIS (2003)

Article Neurosciences

Steps during the development of the zebrafish locomotor network

E Brustein et al.

JOURNAL OF PHYSIOLOGY-PARIS (2003)

Review Neurosciences

Retinoid signalling in the development of the central nervous system

M Maden

NATURE REVIEWS NEUROSCIENCE (2002)

Review Neurosciences

Development of the locomotor network in zebrafish

P Drapeau et al.

PROGRESS IN NEUROBIOLOGY (2002)

Article Cell Biology

Active repression of RAR signaling is required for head formation

T Koide et al.

GENES & DEVELOPMENT (2001)