Related references
Note: Only part of the references are listed.Xist RNA antagonizes the SWI/SNF chromatin remodeler BRG1 on the inactive X chromosome
Teddy Jegu et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2019)
Higher-Order Inter-chromosomal Hubs Shape 3D Genome Organization in the Nucleus
Sofia A. Quinodoz et al.
CELL (2018)
Functional Classification and Experimental Dissection of Long Noncoding RNAs
Florian Kopp et al.
CELL (2018)
Enhancer hubs and loop collisions identified from single-allele topologies
Amin Allahyar et al.
NATURE GENETICS (2018)
The reference epigenome and regulatory chromatin landscape of chronic lymphocytic leukemia
Renee Beekman et al.
NATURE MEDICINE (2018)
H3K4me2 and WDR5 enriched chromatin interacting long non-coding RNAs maintain transcriptionally competent chromatin at divergent transcriptional units
Santhilal Subhash et al.
NUCLEIC ACIDS RESEARCH (2018)
The Evf2 Ultraconserved Enhancer lncRNA Functionally and Spatially Organizes Megabase Distant Genes in the Developing Forebrain
Ivelisse Cajigas et al.
MOLECULAR CELL (2018)
Functional CRISPR screen identifies AP1-associated enhancer regulating FOXF1 to modulate oncogene-induced senescence
Ruiqi Han et al.
GENOME BIOLOGY (2018)
SMARCB1-mediated SWI/SNF complex function is essential for enhancer regulation
Xiaofeng Wang et al.
NATURE GENETICS (2017)
ARID1A loss impairs enhancer-mediated gene regulation and drives colon cancer in mice
Radhika Mathur et al.
NATURE GENETICS (2017)
Massive reshaping of genome-nuclear lamina interactions during oncogene-induced senescence
Christelle Lenain et al.
GENOME RESEARCH (2017)
AP-1 Transcription Factors and the BAF Complex Mediate Signal-Dependent Enhancer Selection
Thomas Vierbuchen et al.
MOLECULAR CELL (2017)
SMARCB1 is required for widespread BAF complex-mediated activation of enhancers and bivalent promoters
Robert T. Nakayama et al.
NATURE GENETICS (2017)
The SWI/SNF chromatin remodelling complex is required for maintenance of lineage specific enhancers
Burak H. Alver et al.
NATURE COMMUNICATIONS (2017)
The multidimensional mechanisms of long noncoding RNA function
Francesco P. Marchese et al.
GENOME BIOLOGY (2017)
The human lncRNA LINC-PINT inhibits tumor cell invasion through a highly conserved sequence element
Oskar Marin-Bejar et al.
GENOME BIOLOGY (2017)
Integrated (epi)-Genomic Analyses Identify Subgroup-Specific Therapeutic Targets in CNS Rhabdoid Tumors
Jonathon Torchia et al.
CANCER CELL (2016)
Atypical Teratoid/Rhabdoid Tumors Are Comprised of Three Epigenetic Subgroups with Distinct Enhancer Landscapes
Pascal D. Johann et al.
CANCER CELL (2016)
Dissecting Immune Circuits by Linking CRISPR-Pooled Screens with Single-Cell RNA-Seq
Diego Adhemar Jaitin et al.
CELL (2016)
SWI/SNF regulates a transcriptional program that induces senescence to prevent liver cancer
Luca Tordella et al.
GENES & DEVELOPMENT (2016)
LincRNA-Cox2 Promotes Late Inflammatory Gene Transcription in Macrophages through Modulating SWI/SNF-Mediated Chromatin Remodeling
Guoku Hu et al.
JOURNAL OF IMMUNOLOGY (2016)
Enhancers as non-coding RNA transcription units: recent insights and future perspectives
Wenbo Li et al.
NATURE REVIEWS GENETICS (2016)
7SK-BAF axis controls pervasive transcription at enhancers
Ryan A. Flynn et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2016)
deepTools2: a next generation web server for deep-sequencing data analysis
Fidel Ramirez et al.
NUCLEIC ACIDS RESEARCH (2016)
7SK-BAF axis controls pervasive transcription at enhancers
Ryan A. Flynn et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2016)
The Long Noncoding RNA IncTCF7 Promotes Self-Renewal of Human Liver Cancer Stem Cells through Activation of Wnt Signaling
Yanying Wang et al.
CELL STEM CELL (2015)
Gas6 Delays Senescence in Vascular Smooth Muscle Cells through the PI3K/Akt/FoxO Signaling Pathway
Cheng-wei Jin et al.
CELLULAR PHYSIOLOGY AND BIOCHEMISTRY (2015)
Evf2 lncRNA/BRG1/DLX1 interactions reveal RNA-dependent inhibition of chromatin remodeling
Ivelisse Cajigas et al.
DEVELOPMENT (2015)
Decreased expression of ABAT and STC2 hallmarks ER-positive inflammatory breast cancer and endocrine therapy resistance in advanced disease
Maurice P. H. M. Jansen et al.
MOLECULAR ONCOLOGY (2015)
Genome-scale transcriptional activation by an engineered CRISPR-Cas9 complex
Silvana Konermann et al.
NATURE (2015)
The recruitment of chromatin modifiers by long noncoding RNAs: lessons from PRC2
Chen Davidovich et al.
RNA (2015)
Distinct Transcriptional Programs Underlie Sox9 Regulation of the Mammalian Chondrocyte
Shinsuke Ohba et al.
CELL REPORTS (2015)
Mammalian SWI/SNF chromatin remodeling complexes and cancer: Mechanistic insights gained from human genomics
Cigall Kadoch et al.
SCIENCE ADVANCES (2015)
A long noncoding RNA protects the heart from pathological hypertrophy
Pei Han et al.
NATURE (2014)
Discovery and saturation analysis of cancer genes across 21 tumour types
Michael S. Lawrence et al.
NATURE (2014)
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin et al.
BIOINFORMATICS (2013)
Lamin B1 depletion in senescent cells triggers large-scale changes in gene expression and the chromatin landscape
Parisha P. Shah et al.
GENES & DEVELOPMENT (2013)
The long noncoding RNA SChLAP1 promotes aggressive prostate cancer and antagonizes the SWI/SNF complex
John R. Prensner et al.
NATURE GENETICS (2013)
Proteomic and bioinformatic analysis of mammalian SWI/SNF complexes identifies extensive roles in human malignancy
Cigall Kadoch et al.
NATURE GENETICS (2013)
High-throughput chromatin immunoprecipitation for genome-wide mapping of in vivo protein-DNA interactions and epigenomic states
Ronnie Blecher-Gonen et al.
NATURE PROTOCOLS (2013)
RIPSeeker: a statistical package for identifying protein-associated transcripts from RIP-seq experiments
Yue Li et al.
NUCLEIC ACIDS RESEARCH (2013)
An integrated encyclopedia of DNA elements in the human genome
Ian Dunham et al.
NATURE (2012)
ChromHMM: automating chromatin-state discovery and characterization
Jason Ernst et al.
NATURE METHODS (2012)
Intronic RNAs mediate EZH2 regulation of epigenetic targets
Sonia Guil et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2012)
Chromatin Isolation by RNA Purification (ChIRP)
Ci Chu et al.
JOVE-JOURNAL OF VISUALIZED EXPERIMENTS (2012)
MEME-ChIP: motif analysis of large DNA datasets
Philip Machanick et al.
BIOINFORMATICS (2011)
Molecular signatures database (MSigDB) 3.0
Arthur Liberzon et al.
BIOINFORMATICS (2011)
Diverse Roles and Interactions of the SWI/SNF Chromatin Remodeling Complex Revealed Using Global Approaches
Ghia M. Euskirchen et al.
PLOS GENETICS (2011)
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
Mark D. Robinson et al.
BIOINFORMATICS (2010)
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
BIOINFORMATICS (2010)
ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data
Lihua J. Zhu et al.
BMC BIOINFORMATICS (2010)
Widespread transcription at neuronal activity-regulated enhancers
Tae-Kyung Kim et al.
NATURE (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
MicroRNA-mediated switching of chromatin-remodelling complexes in neural development
Andrew S. Yoo et al.
NATURE (2009)
Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression
Ahmad M. Khalil et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
Erez Lieberman-Aiden et al.
SCIENCE (2009)
Chemokine signaling via the CXCR2 receptor reinforces senescence
Juan C. Acosta et al.
CELL (2008)
FFPred: an integrated feature-based function prediction server for vertebrate proteomes
A. E. Lobley et al.
NUCLEIC ACIDS RESEARCH (2008)
Model-based Analysis of ChIP-Seq (MACS)
Yong Zhang et al.
GENOME BIOLOGY (2008)
Functional demarcation of active and silent chromatin domains in human HOX loci by Noncoding RNAs
John L. Rinn et al.
CELL (2007)
Loss of the hSNF5 gene concomitantly inactivates p21CIP/WAF1 and p16INK4a activity associated with replicative senescence in A204 rhabdoid tumor cells
JJ Chai et al.
CANCER RESEARCH (2005)
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
A Subramanian et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
p16INK4a is required for hSNF5 chromatin remodeler-induced cellular senescence in malignant rhabdoid tumor cells
I Oruetxebarria et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2004)
Rb-mediated heterochromatin formation and silencing of E2F target genes during cellular senescence
M Narita et al.
CELL (2003)
Share Paper
