4.6 Article

Characterization of sequence variability hotspots in Cranichideae plastomes (Orchidaceae, Orchidoideae)

Related references

Note: Only part of the references are listed.
Article Plant Sciences

Complete chloroplast genome of Anathallis obovata (Orchidaceae: Pleurothallidinae)

Anna Victoria Silverio Righetto Mauad et al.

BRAZILIAN JOURNAL OF BOTANY (2019)

Article Biochemistry & Molecular Biology

Molecular systematics of Goodyerinae (Cranichideae, Orchidoideae, Orchidaceae) based on multiple nuclear and plastid regions

Shi-Pin Chen et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2019)

Article Biochemical Research Methods

IRscope: an online program to visualize the junction sites of chloroplast genomes

Ali Amiryousefi et al.

BIOINFORMATICS (2018)

Article Biochemistry & Molecular Biology

DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets

Julio Rozas et al.

MOLECULAR BIOLOGY AND EVOLUTION (2017)

Article Biochemical Research Methods

ModelFinder: fast model selection for accurate phylogenetic estimates

Subha Kalyaanamoorthy et al.

NATURE METHODS (2017)

Article Multidisciplinary Sciences

Comparative analysis of Dendrobium plastomes and utility of plastomic mutational hotspots

Niu Zhitao et al.

SCIENTIFIC REPORTS (2017)

Article Evolutionary Biology

Plastid phylogenomics and molecular evolution of Alismatales

T. Gregory Ross et al.

CLADISTICS (2016)

Review Plant Sciences

NDH-1 and NDH-2 Plastoquinone Reductases in Oxygenic Photosynthesis

Gilles Peltier et al.

ANNUAL REVIEW OF PLANT BIOLOGY, VOL 67 (2016)

Article Biochemistry & Molecular Biology

tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes

Todd M. Lowe et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Evolutionary Biology

Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices

Olga Chernomor et al.

SYSTEMATIC BIOLOGY (2016)

Review Biotechnology & Applied Microbiology

Chloroplast genomes: diversity, evolution, and applications in genetic engineering

Henry Daniell et al.

GENOME BIOLOGY (2016)

Review Plant Sciences

An updated classification of Orchidaceae

Mark W. Chase et al.

BOTANICAL JOURNAL OF THE LINNEAN SOCIETY (2015)

Article Multidisciplinary Sciences

The location and translocation of ndh genes of chloroplast origin in the Orchidaceae family

Choun-Sea Lin et al.

SCIENTIFIC REPORTS (2015)

Article Biochemistry & Molecular Biology

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

Lam-Tung Nguyen et al.

MOLECULAR BIOLOGY AND EVOLUTION (2015)

Article Multidisciplinary Sciences

An Improved Protocol for Intact Chloroplasts and cpDNA Isolation in Conifers

Leila do Nascimento Vieira et al.

PLOS ONE (2014)

Article Biochemistry & Molecular Biology

Ultrafast Approximation for Phylogenetic Bootstrap

Bui Quang Minh et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Biochemistry & Molecular Biology

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

Kazutaka Katoh et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Plant Sciences

Phylogenetic analysis of Chloraeinae (Orchidaceae) based on plastid and nuclear DNA sequences

Mauricio A. Cisternas et al.

BOTANICAL JOURNAL OF THE LINNEAN SOCIETY (2012)

Article Evolutionary Biology

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

Fredrik Ronquist et al.

SYSTEMATIC BIOLOGY (2012)

Article Biochemistry & Molecular Biology

Rampant Gene Loss in the Underground Orchid Rhizanthella gardneri Highlights Evolutionary Constraints on Plastid Genomes

Etienne Delannoy et al.

MOLECULAR BIOLOGY AND EVOLUTION (2011)

Article Biochemistry & Molecular Biology

The evolution of the plastid chromosome in land plants: gene content, gene order, gene function

Susann Wicke et al.

PLANT MOLECULAR BIOLOGY (2011)

Article Plant Sciences

A molecular phylogeny of the subtribe Pterostylidinae (Orchidaceae): resolving the taxonomic confusion

Jasmine K. Janes et al.

AUSTRALIAN SYSTEMATIC BOTANY (2010)

Letter Plant Sciences

Evolution of mycoheterotrophy in plants: a phylogenetic perspective

Vincent Merckx et al.

NEW PHYTOLOGIST (2010)

Review Plant Sciences

Plastid ndh genes in plant evolution

Mercedes Martin et al.

PLANT PHYSIOLOGY AND BIOCHEMISTRY (2010)

Article Biochemistry & Molecular Biology

Mauve: Multiple alignment of conserved genomic sequence with rearrangements

ACE Darling et al.

GENOME RESEARCH (2004)

Article Biochemistry & Molecular Biology

Utility of plastid psaB gene sequences for investigating intrafamilial relationships within Orchidaceae

KM Cameron

MOLECULAR PHYLOGENETICS AND EVOLUTION (2004)

Article Biochemistry & Molecular Biology

ExPASy: the proteomics server for in-depth protein knowledge and analysis

E Gasteiger et al.

NUCLEIC ACIDS RESEARCH (2003)

Article Biochemistry & Molecular Biology

REPuter: the manifold applications of repeat analysis on a genomic scale

S Kurtz et al.

NUCLEIC ACIDS RESEARCH (2001)