Related references
Note: Only part of the references are listed.Regulation of transposable elements by DNA modifications
Ozgen Deniz et al.
NATURE REVIEWS GENETICS (2019)
Transposable elements significantly contributed to the core promoters in the human genome
Marten Kellner et al.
SCIENCE CHINA-LIFE SCIENCES (2019)
Hominoid-Specific Transposable Elements and KZFPs Facilitate Human Embryonic Genome Activation and Control Transcription in Naive Human ESCs
Julien Pontis et al.
CELL STEM CELL (2019)
Transposable elements drive widespread expression of oncogenes in human cancers (vol 51, pg 611, 2019)
Hyo Sik Jang et al.
NATURE GENETICS (2019)
Functional evaluation of transposable elements as enhancers in mouse embryonic and trophoblast stem cells
Christopher D. Todd et al.
ELIFE (2019)
LINE-1 Evasion of Epigenetic Repression in Humans
Francisco J. Sanchez-Luque et al.
MOLECULAR CELL (2019)
Activation of neuronal genes via LINE-1 elements upon global DNA demethylation in human neural progenitors
Marie E. Jonsson et al.
NATURE COMMUNICATIONS (2019)
Reorganization of 3D genome structure may contribute to gene regulatory evolution in primates
Ittai E. Eres et al.
PLOS GENETICS (2019)
Transcriptionally active HERV-H retrotransposons demarcate topologically associating domains in human pluripotent stem cells
Yanxiao Zhang et al.
NATURE GENETICS (2019)
A Genome-wide Framework for Mapping Gene Regulation via Cellular Genetic Screens
Molly Gasperini et al.
CELL (2019)
The epigenomic landscape of transposable elements across normal human development and anatomy
Erica C. Pehrsson et al.
NATURE COMMUNICATIONS (2019)
Selective silencing of euchromatic L1s revealed by genome-wide screens for L1 regulators
Nian Liu et al.
NATURE (2018)
Ten principles of heterochromatin formation and function
Robin C. Allshire et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2018)
Complexity and conservation of regulatory landscapes underlie evolutionary resilience of mammalian gene expression
Camille Berthelot et al.
NATURE ECOLOGY & EVOLUTION (2018)
Evolutionary Rewiring of Human Regulatory Networks by Waves of Genome Expansion
Davide Marnetto et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2018)
Repeat associated mechanisms of genome evolution and function revealed by the &ITMus caroli&IT and &ITMus pahari&IT genomes
David Thybert et al.
GENOME RESEARCH (2018)
The HUSH complex cooperates with TRIM28 to repress young retrotransposons and new genes
Luisa Robbez-Masson et al.
GENOME RESEARCH (2018)
Dynamics of the epigenetic landscape during the maternal-to-zygotic transition
Melanie A. Eckersley-Maslin et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2018)
Enhancer redundancy provides phenotypic robustness in mammalian development
Marco Osterwalder et al.
NATURE (2018)
Systematic perturbation of retroviral LTRs reveals widespread long-range effects on human gene regulation
Daniel R. Fuentes et al.
ELIFE (2018)
Genome-wide quantification of the effects of DNA methylation on human gene regulation
Amanda J. Lea et al.
ELIFE (2018)
Transposable Element Mediated Innovation in Gene Regulatory Landscapes of Cells: Re-Visiting the Gene-Battery Model
Vasavi Sundaram et al.
BIOESSAYS (2018)
Transposable elements are the primary source of novelty in primate gene regulation
Marco Trizzino et al.
GENOME RESEARCH (2017)
Transposable Element Exaptation into Regulatory Regions Is Rare, Influenced by Evolutionary Age, and Subject to Pleiotropic Constraints
Corinne N. Simonti et al.
MOLECULAR BIOLOGY AND EVOLUTION (2017)
DNMT and HDAC inhibitors induce cryptic transcription start sites encoded in long terminal repeats
David Brocks et al.
NATURE GENETICS (2017)
Conserved roles of mouse DUX and human DUX4 in activating cleavage-stage genes and MERVL/HERVL retrotransposons
Peter G. Hendrickson et al.
NATURE GENETICS (2017)
Impact of cytosine methylation on DNA binding specificities of human transcription factors
Yimeng Yin et al.
SCIENCE (2017)
The Role of KRAB-ZFPs in Transposable Element Repression and Mammalian Evolution
Peng Yang et al.
TRENDS IN GENETICS (2017)
Functional cis-regulatory modules encoded by mouse-specific endogenous retrovirus
Vasavi Sundaram et al.
NATURE COMMUNICATIONS (2017)
Mechanisms of gene regulation in human embryos and pluripotent stem cells
Thorold W. Theunissen et al.
DEVELOPMENT (2017)
Cohesin Loss Eliminates All Loop Domains
Suhas S. P. Rao et al.
CELL (2017)
Ever-Changing Landscapes: Transcriptional Enhancers in Development and Evolution
Hannah K. Long et al.
CELL (2016)
Genetic dissection of the α-globin super-enhancer in vivo
Deborah Hay et al.
NATURE GENETICS (2016)
Genome-wide mapping and analysis of chromosome architecture
Anthony D. Schmitt et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2016)
Regulatory evolution of innate immunity through co-option of endogenous retroviruses
Edward B. Chuong et al.
SCIENCE (2016)
Endogenous retroviral promoter exaptation in human cancer
Artem Babaian et al.
MOBILE DNA (2016)
Enhancers, enhancers - from their discovery to today's universe of transcription enhancers
Walter Schaffner
BIOLOGICAL CHEMISTRY (2015)
Enhancer Divergence and cis-Regulatory Evolution in the Human and Chimp Neural Crest
Sara L. Prescott et al.
CELL (2015)
Enhancer Evolution across 20 Mammalian Species
Diego Villar et al.
CELL (2015)
Architectural and Functional Commonalities between Enhancers and Promoters
Tae-Kyung Kim et al.
CELL (2015)
Unwind and transcribe: chromatin reprogramming in the early mammalian embryo
Steffen Biechele et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2015)
Intrinsic retroviral reactivation in human preimplantation embryos and pluripotent cells
Edward J. Grow et al.
NATURE (2015)
Integrative analysis of 111 reference human epigenomes
Anshul Kundaje et al.
NATURE (2015)
Ancient Transposable Elements Transformed the Uterine Regulatory Landscape and Transcriptome during the Evolution of Mammalian Pregnancy
Vincent J. Lynch et al.
CELL REPORTS (2015)
Comparative Hi-C Reveals that CTCF Underlies Evolution of Chromosomal Domain Architecture
Matteo Vietri Rudan et al.
CELL REPORTS (2015)
Pluripotency in the light of the developmental hourglass
Ewart Kuijk et al.
BIOLOGICAL REVIEWS (2015)
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
Suhas S. P. Rao et al.
CELL (2014)
Widespread contribution of transposable elements to the innovation of gene regulatory networks
Vasavi Sundaram et al.
GENOME RESEARCH (2014)
High-throughput functional testing of ENCODE segmentation predictions
Jamie C. Kwasnieski et al.
GENOME RESEARCH (2014)
A comparative encyclopedia of DNA elements in the mouse genome
Feng Yue et al.
NATURE (2014)
Primate-specific endogenous retrovirus-driven transcription defines naive-like stem cells
Jichang Wang et al.
NATURE (2014)
Dynamic regulation of human endogenous retroviruses mediates factor-induced reprogramming and differentiation potential
Mari Ohnuki et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
DNA hypomethylation within specific transposable element families associates with tissue-specific enhancer landscape
Mingchao Xie et al.
NATURE GENETICS (2013)
Endogenous retroviruses function as species-specific enhancer elements in the placenta
Edward B. Chuong et al.
NATURE GENETICS (2013)
Captured retroviral envelope syncytin gene associated with the unique placental structure of higher ruminants
Guillaume Cornelis et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
The Majority of Primate-Specific Regulatory Sequences Are Derived from Transposable Elements
Pierre-Etienne Jacques et al.
PLOS GENETICS (2013)
Transposable element recruitments in the mammalian placenta: impacts and mechanisms
Deena Emera et al.
BRIEFINGS IN FUNCTIONAL GENOMICS (2012)
Waves of Retrotransposon Expansion Remodel Genome Organization and CTCF Binding in Multiple Mammalian Lineages
Dominic Schmidt et al.
CELL (2012)
Embryonic stem cell potency fluctuates with endogenous retrovirus activity
Todd S. Macfarlan et al.
NATURE (2012)
Landscape of transcription in human cells
Sarah Djebali et al.
NATURE (2012)
Topological domains in mammalian genomes identified by analysis of chromatin interactions
Jesse R. Dixon et al.
NATURE (2012)
Architecture of the human regulatory network derived from ENCODE data
Mark B. Gerstein et al.
NATURE (2012)
From ancestral infectious retroviruses to bona fide cellular genes: Role of the captured syncytins in placentation
A. Dupressoir et al.
PLACENTA (2012)
HERV-H RNA is abundant in human embryonic stem cells and a precise marker for pluripotency
Federico A. Santoni et al.
RETROVIROLOGY (2012)
Enhancers as information integration hubs in development: lessons from genomics
Christa Buecker et al.
TRENDS IN GENETICS (2012)
Epigenetic interplay between mouse endogenous retroviruses and host genes
Rita Rebollo et al.
GENOME BIOLOGY (2012)
Epigenetic regulation of transposable element derived human gene promoters
Ahsan Huda et al.
GENE (2011)
Transposon-mediated rewiring of gene regulatory networks contributed to the evolution of pregnancy in mammals
Vincent J. Lynch et al.
NATURE GENETICS (2011)
Histone H3 lysine 9 trimethylation and HP1γ favor inclusion of alternative exons
Violaine Saint-Andre et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2011)
Comparative transcriptome analysis reveals vertebrate phylotypic period during organogenesis
Naoki Irie et al.
NATURE COMMUNICATIONS (2011)
Retrotransposon-Induced Heterochromatin Spreading in the Mouse Revealed by Insertional Polymorphisms
Rita Rebollo et al.
PLOS GENETICS (2011)
Repetitive Elements May Comprise Over Two-Thirds of the Human Genome
A. P. Jason de Koning et al.
PLOS GENETICS (2011)
Gene expression divergence recapitulates the developmental hourglass model
Alex T. Kalinka et al.
NATURE (2010)
Transposable elements have rewired the core regulatory network of human embryonic stem cells
Galih Kunarso et al.
NATURE GENETICS (2010)
MER41 Repeat Sequences Contain Inducible STAT1 Binding Sites
Christoph D. Schmid et al.
PLOS ONE (2010)
KRAB-Zinc Finger Proteins and KAP1 Can Mediate Long-Range Transcriptional Repression through Heterochromatin Spreading
Anna C. Groner et al.
PLOS GENETICS (2010)
Transposable elements in gene regulation and in the evolution of vertebrate genomes
Guillaume Bourque
CURRENT OPINION IN GENETICS & DEVELOPMENT (2009)
Endogenous retroviral LTRs as promoters for human genes: A critical assessment
Carla J. Cohen et al.
GENE (2009)
The regulated retrotransposon transcriptome of mammalian cells
Geoffrey J. Faulkner et al.
NATURE GENETICS (2009)
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
Erez Lieberman-Aiden et al.
SCIENCE (2009)
Retroviral promoters in the human genome
Andrew B. Conley et al.
BIOINFORMATICS (2008)
Evolution of the mammalian transcription factor binding repertoire via transposable elements
Guillaume Bourque et al.
GENOME RESEARCH (2008)
Placental syncytins: Genetic disjunction between the fusogenic and immunosuppressive activity of retroviral envelope proteins
Marianne Mangeney et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Species-specific endogenous retroviruses shape the transcriptional network of the human tumor suppressor protein p53
Ting Wang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Genetic and epigenetic regulators of pluripotency
M. Azim Surani et al.
CELL (2007)
Comparative analysis of transposed element insertion within human and mouse genomes reveals Alu's unique role in shaping the human transcriptome
Noa Sela et al.
GENOME BIOLOGY (2007)
Which transposable elements are active in the human genome?
Ryan E. Mills et al.
TRENDS IN GENETICS (2007)
The evolutionary significance of cis-regulatory mutations
Gregory A. Wray
NATURE REVIEWS GENETICS (2007)
Endogenous retrovirus long terminal repeats as ready-to-use mobile promoters:: The case of primate β3GAL-T5
CA Dunn et al.
GENE (2005)
Repbase update, a database of eukaryotic repetitive elements
J Jurka et al.
CYTOGENETIC AND GENOME RESEARCH (2005)
Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes
JS Han et al.
NATURE (2004)
Transposable elements: Targets for early nutritional effects on epigenetic gene regulation
RA Waterland et al.
MOLECULAR AND CELLULAR BIOLOGY (2003)
Origin of a substantial fraction of human regulatory sequences from transposable elements
IK Jordan et al.
TRENDS IN GENETICS (2003)
Many human genes are transcribed from the antisense promoter of L1 retrotransposon
P Nigumann et al.
GENOMICS (2002)