Related references
Note: Only part of the references are listed.Open Chromatin, Epigenetic Plasticity, and Nuclear Organization in Pluripotency
Sharon Schlesinger et al.
DEVELOPMENTAL CELL (2019)
Optimized ChIP-seq method facilitates transcription factor profiling in human tumors
Abhishek A. Singh et al.
LIFE SCIENCE ALLIANCE (2019)
A Linc1405/Eomes Complex Promotes Cardiac Mesoderm Specification and Cardiogenesis
Xudong Guo et al.
CELL STEM CELL (2018)
Defining the earliest step of cardiovascular lineage segregation by single-cell RNA-seq
Fabienne Lescroart et al.
SCIENCE (2018)
The interaction landscape between transcription factors and the nucleosome
Fangjie Zhu et al.
NATURE (2018)
Combinatorial Smad2/3 Activities Downstream of Nodal Signaling Maintain Embryonic/Extra-Embryonic Cell Identities during Lineage Priming
Anna D. Senft et al.
CELL REPORTS (2018)
Nervous System Regionalization Entails Axial Allocation before Neural Differentiation
Vicki Metzis et al.
CELL (2018)
BRACHYURY directs histone acetylation to target loci during mesoderm development
Arica Beisaw et al.
EMBO REPORTS (2018)
Derivation of hypermethylated pluripotent embryonic stem cells with high potency
Siqin Bao et al.
CELL RESEARCH (2018)
Antagonistic Activities of Sox2 and Brachyury Control the Fate Choice of Neuro-Mesodermal Progenitors
Frederic Koch et al.
DEVELOPMENTAL CELL (2017)
A Gene Regulatory Network Balances Neural and Mesoderm Specification during Vertebrate Trunk Development
Mina Gouti et al.
DEVELOPMENTAL CELL (2017)
Functional characterisation of cis-regulatory elements governing dynamic Eomes expression in the early mouse embryo
Claire S. Simon et al.
DEVELOPMENT (2017)
Cell fate control by pioneer transcription factors
Makiko Iwafuchi-Doi et al.
DEVELOPMENT (2016)
The Cardiac TBX5 Interactome Reveals a Chromatin Remodeling Network Essential for Cardiac Septation
Lauren Waldron et al.
DEVELOPMENTAL CELL (2016)
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update
Enis Afgan et al.
NUCLEIC ACIDS RESEARCH (2016)
Intermediate Progenitor Cohorts Differentially Generate Cortical Layers and Require Tbr2 for Timely Acquisition of Neuronal Subtype Identity
Anca B. Mihalas et al.
CELL REPORTS (2016)
ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization
Guangchuang Yu et al.
BIOINFORMATICS (2015)
Neuromesodermal progenitors and the making of the spinal cord
Domingos Henrique et al.
DEVELOPMENT (2015)
Brachyury and SMAD signalling collaboratively orchestrate distinct mesoderm and endoderm gene regulatory networks in differentiating human embryonic stem cells
Tiago Faial et al.
DEVELOPMENT (2015)
Intrinsic regulations in neural fate commitment
Ke Tang et al.
DEVELOPMENT GROWTH & DIFFERENTIATION (2015)
ClustVis: a web tool for visualizing clustering of multivariate data using Principal Component Analysis and heatmap
Tauno Metsalu et al.
NUCLEIC ACIDS RESEARCH (2015)
Global identification of Smad2 and Eomesodermin targets in zebrafish identifies a conserved transcriptional network in mesendoderm and a novel role for Eomesodermin in repression of ectodermal gene expression
Andrew C. Nelson et al.
BMC BIOLOGY (2014)
deepTools: a flexible platform for exploring deep-sequencing data
Fidel Ramirez et al.
NUCLEIC ACIDS RESEARCH (2014)
The transcription factor Pou3f1 promotes neural fate commitment via activation of neural lineage genes and inhibition of external signaling pathways
Qingqing Zhu et al.
ELIFE (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
Helga Thorvaldsdottir et al.
BRIEFINGS IN BIOINFORMATICS (2013)
The histone demethylase Jmjd3 sequentially associates with the transcription factors Tbx3 and Eomes to drive endoderm differentiation
Apriliana E. R. Kartikasari et al.
EMBO JOURNAL (2013)
The T-box transcription factor Eomesodermin is essential for AVE induction in the mouse embryo
Sonja Nowotschin et al.
GENES & DEVELOPMENT (2013)
Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
Jason D. Buenrostro et al.
NATURE METHODS (2013)
The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote
Yang Liao et al.
NUCLEIC ACIDS RESEARCH (2013)
In Vivo T-Box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuromesodermal Bipotency
George E. Gentsch et al.
CELL REPORTS (2013)
Transcriptional regulatory networks in epiblast cells and during anterior neural plate development as modeled in epiblast stem cells
Makiko Iwafuchi-Doi et al.
DEVELOPMENT (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters
Guangchuang Yu et al.
OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY (2012)
Genomic Targets of Brachyury (T) in Differentiating Mouse Embryonic Stem Cells
Amanda L. Evans et al.
PLOS ONE (2012)
Activin induces cortical interneuron identity and differentiation in embryonic stem cell-derived telencephalic neural precursors
Serafi Cambray et al.
NATURE COMMUNICATIONS (2012)
Pluripotency factors regulate definitive endoderm specification through eomesodermin
Adrian Kee Keong Teo et al.
GENES & DEVELOPMENT (2011)
Tbx6-dependent Sox2 regulation determines neural or mesodermal fate in axial stem cells
Tatsuya Takemoto et al.
NATURE (2011)
The T-box transcription factor Eomesodermin acts upstream of Mesp1 to specify cardiac mesoderm during mouse gastrulation
Ita Costello et al.
NATURE CELL BIOLOGY (2011)
Epiblast Stem Cell Subpopulations Represent Mouse Embryos of Distinct Pregastrulation Stages
Dong Wook Han et al.
CELL (2010)
The T-box transcription factor Brachyury promotes epithelial-mesenchymal transition in human tumor cells
Romaine I. Fernando et al.
JOURNAL OF CLINICAL INVESTIGATION (2010)
Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
Sven Heinz et al.
MOLECULAR CELL (2010)
GREAT improves functional interpretation of cis-regulatory regions
Cory Y. McLean et al.
NATURE BIOTECHNOLOGY (2010)
Naive and Primed Pluripotent States
Jennifer Nichols et al.
CELL STEM CELL (2009)
Highly efficient neural conversion of human ES and iPS cells by dual inhibition of SMAD signaling
Stuart M. Chambers et al.
NATURE BIOTECHNOLOGY (2009)
Making a commitment: cell lineage allocation and axis patterning in the early mouse embryo
Sebastian J. Arnold et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2009)
Pivotal roles for eomesodermin during axis formation, epithelium-to-mesenchyme transition and endoderm specification in the mouse
Sebastian J. Arnold et al.
DEVELOPMENT (2008)
The T-box transcription factor Eomes/Tbr2 regulates neurogenesis in the cortical subventricular zone
Sebastian J. Arnold et al.
GENES & DEVELOPMENT (2008)
Coordinated but physically separable interaction with H3K27-demethylase and H3K4-methyltransferase activities are required for T-box protein-mediated activation of developmental gene expression
Sara A. Miller et al.
GENES & DEVELOPMENT (2008)
Model-based Analysis of ChIP-Seq (MACS)
Yong Zhang et al.
GENOME BIOLOGY (2008)
Expression of Msgn1 in the presomitic mesoderm is controlled by synergism of WNT signalling and Tbx6
Lars Wittler et al.
EMBO REPORTS (2007)
Derivation of pluripotent epiblast stem cells from mammalian embryos
I. Gabrielle M. Brons et al.
NATURE (2007)
New cell lines from mouse epiblast share defining features with human embryonic stem cells
Paul J. Tesar et al.
NATURE (2007)
Dissecting the molecular hierarchy for mesendoderm differentiation through a combination of embryonic stem cell culture and RNA interference
Naoki Izumi et al.
STEM CELLS (2007)
Gene function in mouse embryogenesis: get set for gastrulation
Patrick P. L. Tam et al.
NATURE REVIEWS GENETICS (2007)
Primitive streak formation in mice is preceded by localized activation of Brachyury and Wnt3
JA Rivera-Pérez et al.
DEVELOPMENTAL BIOLOGY (2005)
Development of definitive endoderm from embryonic stem cells in culture
A Kubo et al.
DEVELOPMENT (2004)
Nodal antagonists regulate formation of the anteroposterior axis of the mouse embryo
M Yamamoto et al.
NATURE (2004)
Wnt proteins are lipid-modified and can act as stem cell growth factors
K Willert et al.
NATURE (2003)
Nodal antagonists in the anterior visceral endoderm prevent the formation of multiple primitive streaks
A Perea-Gomez et al.
DEVELOPMENTAL CELL (2002)
Neural induction, the default model and embryonic stem cells
I Muñoz-Sanjuán et al.
NATURE REVIEWS NEUROSCIENCE (2002)
The use of inducible engrailed fusion proteins to study the cellular functions of eukaryotic transcription factors
ER Vickers et al.
METHODS (2002)
Nodal signalling in the epiblast patterns the early mouse embryo
J Brennan et al.
NATURE (2001)
Direct neural fate specification from embryonic stem cells: A primitive mammalian neural stem cell stage acquired through a default mechanism
V Tropepe et al.
NEURON (2001)
Transforming growth factor β-independent shuttling of Smad4 between the cytoplasm and nucleus
CE Pierreux et al.
MOLECULAR AND CELLULAR BIOLOGY (2000)
Eomesodermin is required for mouse trophoblast development and mesoderm formation
AP Russ et al.
NATURE (2000)
Brachyury is a target gene of the Wnt/β-catenin signaling pathway
SJ Arnold et al.
MECHANISMS OF DEVELOPMENT (2000)
Share Paper
