Related references
Note: Only part of the references are listed.Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
Evan Bolyen et al.
NATURE BIOTECHNOLOGY (2019)
Genome properties in 2019: a new companion database to InterPro for the inference of complete functional attributes
Lorna J. Richardson et al.
NUCLEIC ACIDS RESEARCH (2019)
The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications
Rolf Henrik Nilsson et al.
NUCLEIC ACIDS RESEARCH (2019)
Metagenomic binning and association of plasmids with bacterial host genomes using DNA methylation
John Beaulaurier et al.
NATURE BIOTECHNOLOGY (2018)
EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies
Alex L. Mitchell et al.
NUCLEIC ACIDS RESEARCH (2018)
Different temperatures select distinctive acetic acid bacteria species and promotes organic acids production during Kombucha tea fermentation
Francesca De Filippis et al.
FOOD MICROBIOLOGY (2018)
Understanding Kombucha Tea Fermentation: A Review
Silvia Alejandra Villarreal-Soto et al.
JOURNAL OF FOOD SCIENCE (2018)
PlasFlow: predicting plasmid sequences in metagenomic data using genome signatures
Pawel S. Krawczyk et al.
NUCLEIC ACIDS RESEARCH (2018)
Complete genome analysis of &ITGluconacetobacter xylinus&IT CGMCC 2955 for elucidating bacterial cellulose biosynthesis metabolic regulation
Miao Liu et al.
SCIENTIFIC REPORTS (2018)
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
Chirag Jain et al.
NATURE COMMUNICATIONS (2018)
Cellulose synthesis by Komagataeibacter rhaeticus strain P 1463 isolated from Kombucha
Pavels Semjonovs et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2017)
Metagenomics insights into food fermentations
Francesca De Filippis et al.
MICROBIAL BIOTECHNOLOGY (2017)
metaSPAdes: a new versatile metagenomic assembler
Sergey Nurk et al.
GENOME RESEARCH (2017)
dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication
Matthew R. Olm et al.
ISME JOURNAL (2017)
antiSMASH 4.0-improvements in chemistry prediction and gene cluster boundary identification
Kai Blin et al.
NUCLEIC ACIDS RESEARCH (2017)
The spoilage yeast Zygosaccharomyces bailii: Foe or friend?
Nurzhan Kuanyshev et al.
YEAST (2017)
Zygosaccharomyces bailii Is a Potential Producer of Various Flavor Compounds in Chinese Maotai-Flavor Liquor Fermentation
Yan Xu et al.
FRONTIERS IN MICROBIOLOGY (2017)
Unraveling microbial ecology of industrial-scale Kombucha fermentations by metabarcoding and culture-based methods
Monika Coton et al.
FEMS MICROBIOLOGY ECOLOGY (2017)
The Zygosaccharomyces bailii transcription factor Haa1 is required for acetic acid and copper stress responses suggesting subfunctionalization of the ancestral bifunctional protein Haa1/Cup2
Margarida Palma et al.
BMC GENOMICS (2017)
Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
Nuala A. O'Leary et al.
NUCLEIC ACIDS RESEARCH (2016)
Kombucha tea fermentation: Microbial and biochemical dynamics
Somnath Chakravorty et al.
INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY (2016)
BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences
Minoru Kanehisa et al.
JOURNAL OF MOLECULAR BIOLOGY (2016)
Mash: fast genome and metagenome distance estimation using MinHash
Brian D. Ondov et al.
GENOME BIOLOGY (2016)
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Donovan H. Parks et al.
GENOME RESEARCH (2015)
Microbial species delineation using whole genome sequences
Neha J. Varghese et al.
NUCLEIC ACIDS RESEARCH (2015)
Bacterial cellulose biosynthesis: diversity of operons, subunits, products, and functions
Ute Romling et al.
TRENDS IN MICROBIOLOGY (2015)
Primer and platform effects on 16S rRNA tag sequencing
Julien Tremblay et al.
FRONTIERS IN MICROBIOLOGY (2015)
MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
Dongwan D. Kang et al.
PEERJ (2015)
Metabarcoding of the kombucha microbial community grown in different microenvironments
Oleg N. Reva et al.
AMB EXPRESS (2015)
Rfam 12.0: updates to the RNA families database
Eric P. Nawrocki et al.
NUCLEIC ACIDS RESEARCH (2015)
Metagenomics: Tools and Insights for Analyzing Next-Generation Sequencing Data Derived from Biodiversity Studies
Anastasis Oulas et al.
BIOINFORMATICS AND BIOLOGY INSIGHTS (2015)
Neurotransmitters as food supplements: the effects of GABA on brain and behavior
Evert Boonstra et al.
FRONTIERS IN PSYCHOLOGY (2015)
Role of bacterial volatile compounds in bacterial biology
Bianca Audrain et al.
FEMS MICROBIOLOGY REVIEWS (2015)
Prokka: rapid prokaryotic genome annotation
Torsten Seemann
BIOINFORMATICS (2014)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
A Review on Kombucha TeaMicrobiology, Composition, Fermentation, Beneficial Effects, Toxicity, and Tea Fungus
Rasu Jayabalan et al.
COMPREHENSIVE REVIEWS IN FOOD SCIENCE AND FOOD SAFETY (2014)
Sequence-based analysis of the bacterial and fungal compositions of multiple kombucha (tea fungus) samples
Alan J. Marsh et al.
FOOD MICROBIOLOGY (2014)
QUAST: quality assessment tool for genome assemblies
Alexey Gurevich et al.
BIOINFORMATICS (2013)
Infernal 1.1: 100-fold faster RNA homology searches
Eric P. Nawrocki et al.
BIOINFORMATICS (2013)
TIGRFAMs and Genome Properties in 2013
Daniel H. Haft et al.
NUCLEIC ACIDS RESEARCH (2013)
Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies
Anna Klindworth et al.
NUCLEIC ACIDS RESEARCH (2013)
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
Christian Quast et al.
NUCLEIC ACIDS RESEARCH (2013)
WebAUGUSTUS-a web service for training AUGUSTUS and predicting genes in eukaryotes
Katharina J. Hoff et al.
NUCLEIC ACIDS RESEARCH (2013)
Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data
Johan Bengtsson-Palme et al.
METHODS IN ECOLOGY AND EVOLUTION (2013)
Genome Sequence of the Food Spoilage Yeast Zygosaccharomyces bailii CLIB 213T
Virginie Galeote et al.
GENOME ANNOUNCEMENTS (2013)
PRODUCTION OF GABA (γ-AMINOBUTYRIC ACID) BY MICROORGANISMS: A REVIEW
Radhika Dhakal et al.
BRAZILIAN JOURNAL OF MICROBIOLOGY (2012)
Description of Komagataeibacter gen. nov., with proposals of new combinations (Acetobacteraceae)
Yuzo Yamada et al.
JOURNAL OF GENERAL AND APPLIED MICROBIOLOGY (2012)
Plasmid Metagenome Reveals High Levels of Antibiotic Resistance Genes and Mobile Genetic Elements in Activated Sludge
Tong Zhang et al.
PLOS ONE (2011)
Controlled mixed culture fermentation: a new perspective on the use of non-Saccharomyces yeasts in winemaking
Maurizio Ciani et al.
FEMS YEAST RESEARCH (2010)
QIIME allows analysis of high-throughput community sequencing data
J. Gregory Caporaso et al.
NATURE METHODS (2010)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
A peculiar stimulatory effect of acetic and lactic acid on growth and fermentative metabolism of Zygosaccharomyces bailii
T. D. T. Dang et al.
FOOD MICROBIOLOGY (2009)
Biosorption of Cr(VI) and Cu(II) by waste tea fungal biomass
Radojka Razmouski et al.
ECOLOGICAL ENGINEERING (2008)
Life on the margin:: genetic isolation and diversity loss in a peripheral marine ecosystem, the Baltic Sea
Kerstin Johannesson et al.
MOLECULAR ECOLOGY (2006)
Yeast ecology of Kombucha fermentation
AL Teoh et al.
INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY (2004)
Versatile and open software for comparing large genomes
S Kurtz et al.
GENOME BIOLOGY (2004)
Aerobic sugar metabolism in the spoilage yeast Zygosaccharomyces bailii
A Merico et al.
FEMS YEAST RESEARCH (2003)
Effect of tea fungal enzymes on the quality of black tea
GS Murugesan et al.
FOOD CHEMISTRY (2002)
Phosphodiesterase A1, a regulator of cellulose synthesis in Acetobacter xylinum, is a heme-based sensor
AL Chang et al.
BIOCHEMISTRY (2001)
Expression of a glutamate decarboxylase homologue is required for normal oxidative stress tolerance in Saccharomyces cerevisiae
ST Coleman et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2001)
Changes in major components of tea fungus metabolites during prolonged fermentation
C Chen et al.
JOURNAL OF APPLIED MICROBIOLOGY (2000)
Kombucha, the fermented tea: Microbiology, composition, and claimed health effects
CJ Greenwalt et al.
JOURNAL OF FOOD PROTECTION (2000)
Kombucha fermentation and its antimicrobial activity
G Sreeramulu et al.
JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY (2000)