4.8 Article

Organohalide-respiring Desulfoluna species isolated from marine environments

Related references

Note: Only part of the references are listed.
Review Microbiology

Organohalide respiration in pristine environments: implications for the natural halogen cycle

Siavash Atashgahi et al.

ENVIRONMENTAL MICROBIOLOGY (2018)

Article Multidisciplinary Sciences

An electrogenic redox loop in sulfate reduction reveals a likely widespread mechanism of energy conservation

Americo G. Duarte et al.

NATURE COMMUNICATIONS (2018)

Review Microbiology

Organohalide respiratory chains: composition, topology and key enzymes

Torsten Schubert et al.

FEMS MICROBIOLOGY ECOLOGY (2018)

Article Biochemical Research Methods

DAPAR & ProStaR: software to perform statistical analyses in quantitative discovery proteomics

Samuel Wieczorek et al.

BIOINFORMATICS (2017)

Article Environmental Sciences

Novel reductive dehalogenases from the marine sponge associated bacterium Desulfoluna spongiiphila

Jie Liu et al.

ENVIRONMENTAL MICROBIOLOGY REPORTS (2017)

Article Microbiology

Comparative genomics of the genus Desulfitobacterium

Thomas Kruse et al.

FEMS MICROBIOLOGY ECOLOGY (2017)

Article Biotechnology & Applied Microbiology

Concurrent Haloalkanoate Degradation and Chlorate Reduction by Pseudomonas chloritidismutans AW-1T

Peng Peng et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2017)

Article Biochemistry & Molecular Biology

Heatmapper: web-enabled heat mapping for all

Sasha Babicki et al.

NUCLEIC ACIDS RESEARCH (2016)

Review Biochemical Research Methods

Microbial dehalogenation of organohalides in marine and estuarine environments

Giulio Zanaroli et al.

CURRENT OPINION IN BIOTECHNOLOGY (2015)

Review Chemistry, Analytical

A recent survey of naturally occurring organohalogen compounds

Gordon W. Gribble

ENVIRONMENTAL CHEMISTRY (2015)

Article Geosciences, Multidisciplinary

A marine sink for chlorine in natural organic matter

Alessandra C. Leri et al.

NATURE GEOSCIENCE (2015)

Article Multidisciplinary Sciences

A protein trisulfide couples dissimilatory sulfate reduction to energy conservation

Andre A. Santos et al.

SCIENCE (2015)

Article Microbiology

The primary pathway for lactate oxidation in Desulfovibrio vulgaris

Nicolas Vita et al.

FRONTIERS IN MICROBIOLOGY (2015)

Article Biochemical Research Methods

Informed and automated k-mer size selection for genome assembly

Rayan Chikhi et al.

BIOINFORMATICS (2014)

Article Biochemical Research Methods

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony M. Bolger et al.

BIOINFORMATICS (2014)

Article Engineering, Environmental

Sunlight-Driven Photochemical Halogenation of Dissolved Organic Matter in Seawater: A Natural Abiotic Source of Organobromine and Organoiodine

Jose Diego Mendez-Diaz et al.

ENVIRONMENTAL SCIENCE & TECHNOLOGY (2014)

Article Biotechnology & Applied Microbiology

Genomic Mining for Novel FADH2-Dependent Halogenases in Marine Sponge-Associated Microbial Consortia

Kristina Bayer et al.

MARINE BIOTECHNOLOGY (2013)

Article Biochemistry & Molecular Biology

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

Christian Quast et al.

NUCLEIC ACIDS RESEARCH (2013)

Review Biology

Overview of organohalide-respiring bacteria and a proposal for a classification system for reductive dehalogenases

Laura A. Hug et al.

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2013)

Article Engineering, Environmental

Growth of Dehalococcoides mccartyi strain CBDB1 by reductive dehalogenation of brominated benzenes to benzene

Anke Wagner et al.

ENVIRONMENTAL SCIENCE & TECHNOLOGY (2012)

Article Biochemical Research Methods

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

Anton Bankevich et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2012)

Article Biochemical Research Methods

Fast gapped-read alignment with Bowtie 2

Ben Langmead et al.

NATURE METHODS (2012)

Article Microbiology

Effect of sulfide on growth physiology and gene expression of Desulfovibrio vulgaris Hildenborough

Sean M. Caffrey et al.

ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY (2010)

Article Biochemical Research Methods

Search and clustering orders of magnitude faster than BLAST

Robert C. Edgar

BIOINFORMATICS (2010)

Letter Biochemical Research Methods

QIIME allows analysis of high-throughput community sequencing data

J. Gregory Caporaso et al.

NATURE METHODS (2010)

Article Biotechnology & Applied Microbiology

Dehalogenation Activities and Distribution of Reductive Dehalogenase Homologous Genes in Marine Subsurface Sediments

Taiki Futagami et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

BLAST plus : architecture and applications

Christiam Camacho et al.

BMC BIOINFORMATICS (2009)

Article Microbiology

Desulfoluna spongiiphila sp nov., a dehalogenating bacterium in the Desulfobacteraceae from the marine sponge Aplysina aerophoba

Young-Beom Ahn et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2009)

Article Multidisciplinary Sciences

Shifting the genomic gold standard for the prokaryotic species definition

Michael Richter et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Biotechnology & Applied Microbiology

Dehalorespiration with polychlorinated biphenyls by an anaerobic ultramicrobacterium

Harold D. May et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2008)

Article Engineering, Environmental

Growth of Dehalococcoides strains with chlorophenols as electron acceptors

Lorenz Adrian et al.

ENVIRONMENTAL SCIENCE & TECHNOLOGY (2007)

Article Biotechnology & Applied Microbiology

Oxygen defense in sulfate-reducing bacteria

Alain Dolla et al.

JOURNAL OF BIOTECHNOLOGY (2006)

Review Microbiology

Anaerobic microbial dehalogenation

H Smidt et al.

ANNUAL REVIEW OF MICROBIOLOGY (2004)

Review Agricultural Engineering

Dioxin levels in wood combustion - a review

ED Lavric et al.

BIOMASS & BIOENERGY (2004)

Article Biotechnology & Applied Microbiology

Reductive dehalogenation of brominated phenolic compounds by microorganisms associated with the marine sponge Aplysina aerophoba

YB Ahn et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2003)