4.7 Article

Estimation of random effects and identifying heterogeneous genes in meta-analysis of gene expression studies

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

Claudin multigene family in channel catfish and their expression profiles in response to bacterial infection and hypoxia as revealed by meta-analysis of RNA-Seq datasets

Luyang Sun et al.

COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICS (2015)

Article Biochemistry & Molecular Biology

How data analysis affects power, reproducibility and biological insight of RNA-seq studies in complex datasets

Lucia Peixoto et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemical Research Methods

jNMFMA: a joint non-negative matrix factorization meta-analysis of transcriptomics data

Hong-Qiang Wang et al.

BIOINFORMATICS (2015)

Article Biotechnology & Applied Microbiology

Meta-analysis of RNA-seq expression data across species, tissues and studies

Peter H. Sudmant et al.

GENOME BIOLOGY (2015)

Article Statistics & Probability

HYPOTHESIS SETTING AND ORDER STATISTIC FOR ROBUST GENOMIC META-ANALYSIS

Chi Song et al.

ANNALS OF APPLIED STATISTICS (2014)

Article Biochemistry & Molecular Biology

The cytochrome P450 genes of channel catfish: Their involvement in disease defense responses as revealed by meta-analysis of RNA-Seq data sets

Jiaren Zhang et al.

BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS (2014)

Article Biochemical Research Methods

Differential meta-analysis of RNA-seq data from multiple studies

Andrea Rau et al.

BMC BIOINFORMATICS (2014)

Article Biotechnology & Applied Microbiology

voom: precision weights unlock linear model analysis tools for RNA-seq read counts

Charity W. Law et al.

GENOME BIOLOGY (2014)

Article Medicine, Research & Experimental

Accelerated neurodegeneration through chaperone-mediated oligomerization of tau

Laura J. Blair et al.

JOURNAL OF CLINICAL INVESTIGATION (2013)

Review Genetics & Heredity

Reuse of public genome-wide gene expression data

Johan Rung et al.

NATURE REVIEWS GENETICS (2013)

Review Genetics & Heredity

Meta-analysis methods for genome-wide association studies and beyond

Evangelos Evangelou et al.

NATURE REVIEWS GENETICS (2013)

Article Biochemistry & Molecular Biology

ArrayExpress update-trends in database growth and links to data analysis tools

Gabriella Rustici et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Biochemistry & Molecular Biology

NCBI GEO: archive for functional genomics data sets-update

Tanya Barrett et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Genetics & Heredity

Genes and pathways underlying regional and cell type changes in Alzheimer's disease

Jeremy A. Miller et al.

GENOME MEDICINE (2013)

Article Statistics & Probability

Random Effects Coefficient of Determination for Mixed and Meta-Analysis Models

Eugene Demidenko et al.

COMMUNICATIONS IN STATISTICS-THEORY AND METHODS (2012)

Review Biochemistry & Molecular Biology

Comprehensive literature review and statistical considerations for microarray meta-analysis

George C. Tseng et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Computer Science, Interdisciplinary Applications

Conducting Meta-Analyses in R with the metafor Package

Wolfgang Viechtbauer

JOURNAL OF STATISTICAL SOFTWARE (2010)

Article Mathematical & Computational Biology

Empirical vs natural weighting in random effects meta-analysis

Jonathan J. Shuster

STATISTICS IN MEDICINE (2010)

Article Biochemical Research Methods

Moderated effect size and P-value combinations for microarray meta-analyses

Guillemette Marot et al.

BIOINFORMATICS (2009)

Article Biochemistry & Molecular Biology

Meta-analysis of glioblastoma multiforme versus anaplastic astrocytoma identifies robust gene markers

Jonathan M. Dreyfuss et al.

MOLECULAR CANCER (2009)

Review Medicine, General & Internal

Key Issues in Conducting a Meta-Analysis of Gene Expression Microarray Datasets

Adaikalavan Ramasamy et al.

PLOS MEDICINE (2008)

Article Biochemical Research Methods

GEOquery: a bridge between the gene expression omnibus (GEO) and BioConductor

Davis Sean et al.

BIOINFORMATICS (2007)

Article Multidisciplinary Sciences

Meta-Analysis in Genome-Wide Association Datasets: Strategies and Application in Parkinson Disease

Evangelos Evangelou et al.

PLOS ONE (2007)

Article Medicine, Research & Experimental

Random-effects model for meta-analysis of clinical trials: An update

Rebecca DerSimonian et al.

CONTEMPORARY CLINICAL TRIALS (2007)

Article Computer Science, Interdisciplinary Applications

Robust variance estimation for random effects meta-analysis

Kurex Sidik et al.

COMPUTATIONAL STATISTICS & DATA ANALYSIS (2006)

Article Computer Science, Artificial Intelligence

An introduction to ROC analysis

Tom Fawcett

PATTERN RECOGNITION LETTERS (2006)

Article Education & Educational Research

Bias and efficiency of meta-analytic variance estimators in the random-effects model

W Viechtbauer

JOURNAL OF EDUCATIONAL AND BEHAVIORAL STATISTICS (2005)

Article Multidisciplinary Sciences

Incipient Alzheimer's disease: Microarray correlation analyses reveal major transcriptional and tumor suppressor responses

EM Blalock et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Biochemical Research Methods

affy -: analysis of Affymetrix GeneChip data at the probe level

L Gautier et al.

BIOINFORMATICS (2004)

Review Critical Care Medicine

Statistics review 13: Receiver operating characteristic curves

V Bewick et al.

CRITICAL CARE (2004)

Article Medical Laboratory Technology

Evaluation of quality-control criteria for microarray gene expression analysis

CI Dumur et al.

CLINICAL CHEMISTRY (2004)

Article Biotechnology & Applied Microbiology

Bioconductor: open software development for computational biology and bioinformatics

RC Gentleman et al.

GENOME BIOLOGY (2004)

Article Biochemical Research Methods

Combining multiple microarray studies and modeling interstudy variation

Jung Kyoon Choi et al.

BIOINFORMATICS (2003)

Article Mathematical & Computational Biology

Some general points in estimating heterogeneity variance with the DerSimonian-Laird estimator

D Böhning et al.

BIOSTATISTICS (2002)

Article Biochemistry & Molecular Biology

Gene Expression Omnibus: NCBI gene expression and hybridization array data repository

R Edgar et al.

NUCLEIC ACIDS RESEARCH (2002)