4.7 Article

Comparative genome characterization of the periodontal pathogen Tannerella forsythia

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

CDD/SPARCLE: functional classification of proteins via subfamily domain architectures

Aron Marchler-Bauer et al.

NUCLEIC ACIDS RESEARCH (2017)

Review Microbiology

Polysaccharide Utilization Loci: Fueling Microbial Communities

Julie M. Grondin et al.

JOURNAL OF BACTERIOLOGY (2017)

Review Immunology

The Type IX Secretion System (T9SS): Highlights and Recent Insights into Its Structure and Function

Anna M. Lasica et al.

FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY (2017)

Review Microbiology

Emerging facets of prokaryotic glycosylation

Christina Schaeffer et al.

FEMS MICROBIOLOGY REVIEWS (2017)

Article Microbiology

Draft Genome Sequence of Tannerella forsythia Clinical Isolate 9610

Sesha Hanson-Drury et al.

GENOME ANNOUNCEMENTS (2017)

Article Dentistry, Oral Surgery & Medicine

First Cultivation of Health-Associated Tannerella sp HOT-286 (BU063)

S. R. Vartoukian et al.

JOURNAL OF DENTAL RESEARCH (2016)

Review Genetics & Heredity

The Floating (Pathogenicity) Island: A Genomic Dessert

Richard P. Novick et al.

TRENDS IN GENETICS (2016)

Article Biotechnology & Applied Microbiology

Mash: fast genome and metagenome distance estimation using MinHash

Brian D. Ondov et al.

GENOME BIOLOGY (2016)

Article Microbiology

KLIKK proteases of Tannerella forsythia: putative virulence factors with a unique domain structure

Miroslaw Ksiazek et al.

FRONTIERS IN MICROBIOLOGY (2015)

Article Biochemistry & Molecular Biology

CDD: NCBI's conserved domain database

Aron Marchler-Bauer et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Microbiology

Draft Genome Sequence of Tannerella forsythia Type Strain ATCC 43037

Valentin Friedrich et al.

GENOME ANNOUNCEMENTS (2015)

Article Biochemical Research Methods

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony M. Bolger et al.

BIOINFORMATICS (2014)

Article Biotechnology & Applied Microbiology

GET_HOMOLOGUES, a Versatile Software Package for Scalable and Robust Microbial Pangenome Analysis

Bruno Contreras-Moreira et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)

Article Biochemical Research Methods

QUAST: quality assessment tool for genome assemblies

Alexey Gurevich et al.

BIOINFORMATICS (2013)

Article Biochemical Research Methods

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

Helga Thorvaldsdottir et al.

BRIEFINGS IN BIOINFORMATICS (2013)

Article Biochemistry & Molecular Biology

Phylum-wide general protein O-glycosylation system of the Bacteroidetes

Michael J. Coyne et al.

MOLECULAR MICROBIOLOGY (2013)

Article Multidisciplinary Sciences

Genetics and Evolution of the Salmonella Galactose-Initiated Set of O Antigens

Peter R. Reeves et al.

PLOS ONE (2013)

Review Dentistry, Oral Surgery & Medicine

Beyond the red complex and into more complexity: the polymicrobial synergy and dysbiosis (PSD) model of periodontal disease etiology

G. Hajishengallis et al.

MOLECULAR ORAL MICROBIOLOGY (2012)

Article Biochemistry & Molecular Biology

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

Yanbin Yin et al.

NUCLEIC ACIDS RESEARCH (2012)

Review Biochemistry & Molecular Biology

Glycobiology Aspects of the Periodontal Pathogen Tannerella forsythia

Gerald Posch et al.

BIOMOLECULES (2012)

Article Immunology

Role of Tannerella forsythia NanH Sialidase in Epithelial Cell Attachment

Kiyonobu Honma et al.

INFECTION AND IMMUNITY (2011)

Article Dentistry, Oral Surgery & Medicine

Potential of the Tannerella forsythia S-layer to Delay the Immune Response

G. Sekot et al.

JOURNAL OF DENTAL RESEARCH (2011)

Letter Biotechnology & Applied Microbiology

Integrative genomics viewer

James T. Robinson et al.

NATURE BIOTECHNOLOGY (2011)

Article Biochemistry & Molecular Biology

CDD: a Conserved Domain Database for the functional annotation of proteins

Aron Marchler-Bauer et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Biochemical Research Methods

The Newick utilities: high-throughput phylogenetic tree processing in the Unix shell

Thomas Junier et al.

BIOINFORMATICS (2010)

Letter Biochemical Research Methods

Partitioning biological data with transitivity clustering

Tobias Wittkop et al.

NATURE METHODS (2010)

Article Multidisciplinary Sciences

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

Aaron E. Darling et al.

PLOS ONE (2010)

Article Dentistry, Oral Surgery & Medicine

Virulence mechanisms of Tannerella forsythia

Ashu Sharma

PERIODONTOLOGY 2000 (2010)

Article Biochemical Research Methods

BLAST plus : architecture and applications

Christiam Camacho et al.

BMC BIOINFORMATICS (2009)

Review Biochemistry & Molecular Biology

Complex Glycan Catabolism by the Human Gut Microbiota: The Bacteroidetes Sus-like Paradigm

Eric C. Martens et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2009)

Review Cell Biology

The microbial pan-genome

D Medini et al.

CURRENT OPINION IN GENETICS & DEVELOPMENT (2005)

Article Multidisciplinary Sciences

Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae:: Implications for the microbial pan-genome

H Tettelin et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Biochemistry & Molecular Biology

The bioinformatics resource for oral pathogens

T Chen et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Dentistry, Oral Surgery & Medicine

Tannerella forsythia-induced alveolar bone loss in mice involves leucine-rich-repeat BspA protein

A Sharma et al.

JOURNAL OF DENTAL RESEARCH (2005)

Article Biochemistry & Molecular Biology

Codon bias signatures, organization of microorganisms in codon space, and lifestyle

A Carbone et al.

MOLECULAR BIOLOGY AND EVOLUTION (2005)

Article Biochemistry & Molecular Biology

CD-Search: protein domain annotations on the fly

A Marchler-Bauer et al.

NUCLEIC ACIDS RESEARCH (2004)

Article Biotechnology & Applied Microbiology

Versatile and open software for comparing large genomes

S Kurtz et al.

GENOME BIOLOGY (2004)

Article Biochemical Research Methods

Codon adaptation index as a measure of dominating codon bias

A Carbone et al.

BIOINFORMATICS (2003)

Article Biochemistry & Molecular Biology

OrthoMCL: Identification of ortholog groups for eukaryotic genomes

L Li et al.

GENOME RESEARCH (2003)