4.7 Article

High-level integration of murine intestinal transcriptomics data highlights the importance of the complement system in mucosal homeostasis

Related references

Note: Only part of the references are listed.
Article Biotechnology & Applied Microbiology

Multi-omic measurements of heterogeneity in HeLa cells across laboratories

Yansheng Liu et al.

NATURE BIOTECHNOLOGY (2019)

Review Gastroenterology & Hepatology

Homeostasis of the gut barrier and potential biomarkers

Jerry M. Wells et al.

AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY (2017)

Article Biochemistry & Molecular Biology

The Reactome pathway Knowledgebase

Antonio Fabregat et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Biochemistry & Molecular Biology

The Expression Profile of Complement Components in Podocytes

Xuejuan Li et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2016)

Article Biochemical Research Methods

Comparative study on gene set and pathway topology-based enrichment methods

Michaela Bayerlova et al.

BMC BIOINFORMATICS (2015)

Article Biotechnology & Applied Microbiology

The human cardiac and skeletal muscle proteomes defined by transcriptomics and antibody-based profiling

Cecilia Lindskog et al.

BMC GENOMICS (2015)

Article Multidisciplinary Sciences

Tissue-based map of the human proteome

Mathias Uhlen et al.

SCIENCE (2015)

Review Immunology

Do antimicrobial peptides and complement collaborate in the intestinal mucosa?

Zoe A. Kopp et al.

FRONTIERS IN IMMUNOLOGY (2015)

Review Gastroenterology & Hepatology

Intestinal permeability - a new target for disease prevention and therapy

Stephan C. Bischoff et al.

BMC GASTROENTEROLOGY (2014)

Article Gastroenterology & Hepatology

Brain-Gut Microbiome Interactions and Functional Bowel Disorders

Emeran A. Mayer et al.

GASTROENTEROLOGY (2014)

Article Biochemical Research Methods

Analysis of the Human Tissue-specific Expression by Genome-wide Integration of Transcriptomics and Antibody-based Proteomics

Linn Fagerberg et al.

MOLECULAR & CELLULAR PROTEOMICS (2014)

Article Biochemistry & Molecular Biology

The Reactome pathway knowledgebase

David Croft et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Pathology

Gut Microbiota, Low-grade Inflammation, and Metabolic Syndrome

Benoit Chassaing et al.

TOXICOLOGIC PATHOLOGY (2014)

Review Immunology

Intestinal epithelial cells: regulators of barrier function and immune homeostasis

Lance W. Peterson et al.

NATURE REVIEWS IMMUNOLOGY (2014)

Article Biochemical Research Methods

rBiopaxParser-an R package to parse, modify and visualize BioPAX data

Frank Kramer et al.

BIOINFORMATICS (2013)

Article Biochemical Research Methods

CePa: an R package for finding significant pathways weighted by multiple network centralities

Zuguang Gu et al.

BIOINFORMATICS (2013)

Article Biochemistry & Molecular Biology

A functional CFTR assay using primary cystic fibrosis intestinal organoids

Johanna F. Dekkers et al.

NATURE MEDICINE (2013)

Article Biochemistry & Molecular Biology

NCBI GEO: archive for functional genomics data sets-update

Tanya Barrett et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Immunology

Epithelial-microbial crosstalk in polymeric Ig receptor deficient mice

Dag Henrik Reikvam et al.

EUROPEAN JOURNAL OF IMMUNOLOGY (2012)

Review Multidisciplinary Sciences

Interactions Between the Microbiota and the Immune System

Lora V. Hooper et al.

SCIENCE (2012)

Review Biochemical Research Methods

Ten Years of Pathway Analysis: Current Approaches and Outstanding Challenges

Purvesh Khatri et al.

PLOS COMPUTATIONAL BIOLOGY (2012)

Review Microbiology

Shifting the balance: antibiotic effects on host-microbiota mutualism

Benjamin P. Willing et al.

NATURE REVIEWS MICROBIOLOGY (2011)

Article Multidisciplinary Sciences

Epithelial crosstalk at the microbiota-mucosal interface

Jerry M. Wells et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Multidisciplinary Sciences

Induction of Colonic Regulatory T Cells by Indigenous Clostridium Species

Koji Atarashi et al.

SCIENCE (2011)

Article Immunology

A novel role for CD46 in wound repair

John Cardone et al.

FRONTIERS IN IMMUNOLOGY (2011)

Article Microbiology

The role of innate signaling in the homeostasis of tolerance and immunity in the intestine

Jerry M. Wells et al.

INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY (2010)

Article Biotechnology & Applied Microbiology

The BioPAX community standard for pathway data sharing

Emek Demir et al.

NATURE BIOTECHNOLOGY (2010)

Review Immunology

Complement: a key system for immune surveillance and homeostasis

Daniel Ricklin et al.

NATURE IMMUNOLOGY (2010)

Article Biochemistry & Molecular Biology

The regulation of intestinal mucin MUC2 expression by short-chain fatty acids: implications for epithelial protection

Nanda Burger-van Paassen et al.

BIOCHEMICAL JOURNAL (2009)

Article Biochemistry & Molecular Biology

Sustained in vitro intestinal epithelial culture within a Wnt-dependent stem cell niche

Akifumi Ootani et al.

NATURE MEDICINE (2009)

Article Biochemical Research Methods

GEOmetadb: powerful alternative search engine for the Gene Expression Omnibus

Yuelin Zhu et al.

BIOINFORMATICS (2008)

Article Biochemical Research Methods

Analyzing real-time PCR data by the comparative C-T method

Thomas D. Schmittgen et al.

NATURE PROTOCOLS (2008)

Article Cell Biology

Genome-wide analysis of PPARα activation in murine small intestine

Meike Bunger et al.

PHYSIOLOGICAL GENOMICS (2007)

Article Biochemical Research Methods

GEOquery: a bridge between the gene expression omnibus (GEO) and BioConductor

Davis Sean et al.

BIOINFORMATICS (2007)

Article Gastroenterology & Hepatology

Hepatic cytochrome P-450 reductase-null mice show reduced transcriptional response to quercetin and reveal physiological homeostasis between jejunum and liver

David M. Mutch et al.

AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY (2006)

Review Immunology

Toll-like receptor signalling

S Akira et al.

NATURE REVIEWS IMMUNOLOGY (2004)

Article Biochemistry & Molecular Biology

Gene Expression Omnibus: NCBI gene expression and hybridization array data repository

R Edgar et al.

NUCLEIC ACIDS RESEARCH (2002)

Article Biochemistry & Molecular Biology

KEGG: Kyoto Encyclopedia of Genes and Genomes

M Kanehisa et al.

NUCLEIC ACIDS RESEARCH (2000)