Journal
BIOINFORMATICS
Volume 36, Issue 11, Pages 3558-3560Publisher
OXFORD UNIV PRESS
DOI: 10.1093/bioinformatics/btaa149
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Funding
- National Institutes of Health [R21 AI133140]
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Methods for quantifying the imbalance in CpG methylation between alleles genome-wide have been described but their algorithmic time complexity is quadratic and their practical use requires painstaking attention to infrastructure choice, implementation and execution. To solve this problem, we developed CloudASM, a scalable, ultra-efficient, turn-key, portable pipeline on Google Cloud Platform (GCP) that uses a novel pipeline manager and GCP's serverless enterprise data warehouse.
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