4.7 Article

Insights into the innate immunome of actiniarians using a comparative genomic approach

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

Sudhir Kumar et al.

MOLECULAR BIOLOGY AND EVOLUTION (2016)

Article Fisheries

Diversity of animal immune receptors and the origins of recognition complexity in the deuterostomes

Katherine M. Buckley et al.

DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY (2015)

Article Multidisciplinary Sciences

The genome of Aiptasia, a sea anemone model for coral symbiosis

Sebastian Baumgarten et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Biochemical Research Methods

UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches

Baris E. Suzek et al.

BIOINFORMATICS (2015)

Article Biochemistry & Molecular Biology

SMART: recent updates, new developments and status in 2015

Ivica Letunic et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemistry & Molecular Biology

UniProt: a hub for protein information

Alex Bateman et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Multidisciplinary Sciences

Comparative Analysis and Distribution of Omega-3 lcPUFA Biosynthesis Genes in Marine Molluscs

Joachim M. Surm et al.

PLOS ONE (2015)

Article Multidisciplinary Sciences

Massive expansion and functional divergence of innate immune genes in a protostome

Linlin Zhang et al.

SCIENTIFIC REPORTS (2015)

Article Biochemical Research Methods

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony M. Bolger et al.

BIOINFORMATICS (2014)

Article Biochemical Research Methods

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

Alexandros Stamatakis

BIOINFORMATICS (2014)

Article Biochemistry & Molecular Biology

The Characterization of Sponge NLRs Provides Insight into the Origin and Evolution of This Innate Immune Gene Family in Animals

Benedict Yuen et al.

MOLECULAR BIOLOGY AND EVOLUTION (2014)

Article Genetics & Heredity

The Anadara trapezia transcriptome: A resource for molluscan physiological genomics

Peter J. Prentis et al.

MARINE GENOMICS (2014)

Article Biochemistry & Molecular Biology

Pfam: the protein families database

Robert D. Finn et al.

NUCLEIC ACIDS RESEARCH (2014)

Review Microbiology

Cnidarian- Microbe Interactions and the Origin of Innate Immunity in Metazoans

Thomas C. G. Bosch

ANNUAL REVIEW OF MICROBIOLOGY, VOL 67 (2013)

Article Biochemistry & Molecular Biology

The Complex NOD-Like Receptor Repertoire of the Coral Acropora digitifera Includes Novel Domain Combinations

Mayuko Hamada et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Biochemistry & Molecular Biology

pamlX: A Graphical User Interface for PAML

Bo Xu et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Biochemical Research Methods

CD-HIT: accelerated for clustering the next-generation sequencing data

Limin Fu et al.

BIOINFORMATICS (2012)

Article Biochemical Research Methods

Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction

Jian Ye et al.

BMC BIOINFORMATICS (2012)

Article Multidisciplinary Sciences

The oyster genome reveals stress adaptation and complexity of shell formation

Guofan Zhang et al.

NATURE (2012)

Article Biochemical Research Methods

Fast gapped-read alignment with Bowtie 2

Ben Langmead et al.

NATURE METHODS (2012)

Review Microbiology

Cell Biology of Cnidarian-Dinoflagellate Symbiosis

Simon K. Davy et al.

MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2012)

Article Multidisciplinary Sciences

MyD88-deficient Hydra reveal an ancient function of TLR signaling in sensing bacterial colonizers

Soeren Franzenburg et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Biochemical Research Methods

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

Bo Li et al.

BMC BIOINFORMATICS (2011)

Article Biochemistry & Molecular Biology

Defining the Origins of the NOD-Like Receptor System at the Base of Animal Evolution

Christina Lange et al.

MOLECULAR BIOLOGY AND EVOLUTION (2011)

Article Biotechnology & Applied Microbiology

Full-length transcriptome assembly from RNA-Seq data without a reference genome

Manfred G. Grabherr et al.

NATURE BIOTECHNOLOGY (2011)

Letter Biochemical Research Methods

SignalP 4.0: discriminating signal peptides from transmembrane regions

Thomas Nordahl Petersen et al.

NATURE METHODS (2011)

Article Genetics & Heredity

Domain architecture evolution of pattern-recognition receptors

Qing Zhang et al.

IMMUNOGENETICS (2010)

Article Multidisciplinary Sciences

The dynamic genome of Hydra

Jarrod A. Chapman et al.

NATURE (2010)

Review Genetics & Heredity

Origin and evolution of the adaptive immune system: genetic events and selective pressures

Martin F. Flajnik et al.

NATURE REVIEWS GENETICS (2010)

Review Immunology

How Hydra senses and destroys microbes

Rene Augustin et al.

SEMINARS IN IMMUNOLOGY (2010)

Article Biochemical Research Methods

BLAST plus : architecture and applications

Christiam Camacho et al.

BMC BIOINFORMATICS (2009)

Article Fisheries

Uncovering the evolutionary history of innate immunity: The simple metazoan Hydra uses epithelial cells for host defence

Thomas C. G. Bosch et al.

DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY (2009)

Review Immunology

The roles of TLRs, RLRs and NLRs in pathogen recognition

Taro Kawai et al.

INTERNATIONAL IMMUNOLOGY (2009)

Letter Immunology

The NLR gene family: A standard nomenclature

Jenny P. -Y. Ting et al.

IMMUNITY (2008)

Article Biochemistry & Molecular Biology

PAML 4: Phylogenetic analysis by maximum likelihood

Ziheng Yang

MOLECULAR BIOLOGY AND EVOLUTION (2007)

Article Multidisciplinary Sciences

Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization

Nicholas H. Putnam et al.

SCIENCE (2007)

Article Biochemical Research Methods

CEGMA: a pipeline to accurately annotate core genes in eukaryotic genornes

Genis Parra et al.

BIOINFORMATICS (2007)

Review Immunology

The family of five: TIR-domain-containing adaptors in Toll-like receptor signalling

Luke A. J. O'Neill et al.

NATURE REVIEWS IMMUNOLOGY (2007)

Article Biotechnology & Applied Microbiology

The innate immune repertoire in Cnidaria - ancestral complexity and stochastic gene loss

David J. Miller et al.

GENOME BIOLOGY (2007)

Article Cell Biology

Rel homology domain-containing transcription factors in the cnidarian Nematostella vectensis

James C. Sullivan et al.

DEVELOPMENT GENES AND EVOLUTION (2007)

Article Multidisciplinary Sciences

Research article -: The genome of the sea urchin Strongylocentrotus purpuratus

Erica Sodergren et al.

SCIENCE (2006)

Article Biochemistry & Molecular Biology

WEGO: a web tool for plotting GO annotations

Jia Ye et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Biochemical Research Methods

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

Weizhong Li et al.

BIOINFORMATICS (2006)

Review Biochemistry & Molecular Biology

Pathogen recognition and innate immunity

S Akira et al.

Article Genetics & Heredity

Maintenance of ancestral complexity and non-metazoan genes in two basal cnidarians

U Technau et al.

TRENDS IN GENETICS (2005)

Review Genetics & Heredity

The evolution of metazoan axial properties

MQ Martindale

NATURE REVIEWS GENETICS (2005)

Article Multidisciplinary Sciences

Unexpected complexity of the Wnt gene family in a sea anemone

A Kusserow et al.

NATURE (2005)

Article Biochemistry & Molecular Biology

MUSCLE: multiple sequence alignment with high accuracy and high throughput

RC Edgar

NUCLEIC ACIDS RESEARCH (2004)

Article Biochemistry & Molecular Biology

Roc, a Ras/GTPase domain in complex proteins

L Bosgraaf et al.

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH (2003)

Article Biochemical Research Methods

Evaluation of methods for the prediction of membrane spanning regions

S Möller et al.

BIOINFORMATICS (2001)

Article Medicine, General & Internal

An overview of the immune system

J Parkin et al.

LANCET (2001)

Article Biochemistry & Molecular Biology

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

J Castresana

MOLECULAR BIOLOGY AND EVOLUTION (2000)

Article Biochemistry & Molecular Biology

Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models

ZH Yang et al.

MOLECULAR BIOLOGY AND EVOLUTION (2000)