Related references
Note: Only part of the references are listed.MOGEN: a tool for reconstructing 3D models of genomes from chromosomal conformation capturing data
Tuan Trieu et al.
BIOINFORMATICS (2016)
HSA: integrating multi-track Hi-C data for genome-scale reconstruction of 3D chromatin structure
Chenchen Zou et al.
GENOME BIOLOGY (2016)
A statistical approach for inferring the 3D structure of the genome
Nelle Varoquaux et al.
BIOINFORMATICS (2014)
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
Suhas S. P. Rao et al.
CELL (2014)
3D genome reconstruction from chromosomal contacts
Annick Lesne et al.
NATURE METHODS (2014)
Large-scale reconstruction of 3D structures of human chromosomes from chromosomal contact data
Tuan Trieu et al.
NUCLEIC ACIDS RESEARCH (2014)
A fast algorithm for matrix balancing
Philip A. Knight et al.
IMA JOURNAL OF NUMERICAL ANALYSIS (2013)
3D Chromosome Modeling with Semi-Definite Programming and Hi-C Data
Zhizhuo Zhang et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2013)
Bayesian Inference of Spatial Organizations of Chromosomes
Ming Hu et al.
PLOS COMPUTATIONAL BIOLOGY (2013)
Genome architectures revealed by tethered chromosome conformation capture and population-based modeling
Reza Kalhor et al.
NATURE BIOTECHNOLOGY (2012)
Three-dimensional modeling of chromatin structure from interaction frequency data using Markov chain Monte Carlo sampling
Mathieu Rousseau et al.
BMC BIOINFORMATICS (2011)
The three-dimensional folding of the alpha-globin gene domain reveals formation of chromatin globules
Davide Bau et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2011)
A three-dimensional model of the yeast genome
Zhijun Duan et al.
NATURE (2010)
Spatially confined folding of chromatin in the interphase nucleus
Julio Mateos-Langerak et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
Erez Lieberman-Aiden et al.
SCIENCE (2009)
Dynamic genome architecture in the nuclear space:: regulation of gene expression in three dimensions
Christian Lanctot et al.
NATURE REVIEWS GENETICS (2007)
Version 1.2 of the Crystallography and NMR system
Axel T. Brunger
NATURE PROTOCOLS (2007)
UCSF chimera - A visualization system for exploratory research and analysis
EF Pettersen et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2004)
Nuclear architecture - Visualizing chromatin dynamics in interphase nuclei
SM Gasser
SCIENCE (2002)