4.6 Article

dupRadar: a Bioconductor package for the assessment of PCR artifacts in RNA-Seq data

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

limma powers differential expression analyses for RNA-sequencing and microarray studies

Matthew E. Ritchie et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemical Research Methods

Informatics for RNA Sequencing: A Web Resource for Analysis on the Cloud

Malachi Griffith et al.

PLOS COMPUTATIONAL BIOLOGY (2015)

Review Oncology

Library preparation methods for next-generation sequencing: Tone down the bias

Erwin L. van Dijk et al.

EXPERIMENTAL CELL RESEARCH (2014)

Article Biochemistry & Molecular Biology

From single-cell to cell-pool transcriptomes: Stochasticity in gene expression and RNA splicing

Georgi K. Marinov et al.

GENOME RESEARCH (2014)

Article Biochemical Research Methods

Quantitative single-cell RNA-seq with unique molecular identifiers

Saiful Islam et al.

NATURE METHODS (2014)

Review Mathematical & Computational Biology

biobambam: tools for read pair collation based algorithms on BAM files

German Tischler et al.

SOURCE CODE FOR BIOLOGY AND MEDICINE (2014)

Article Biotechnology & Applied Microbiology

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love et al.

GENOME BIOLOGY (2014)

Article Biochemical Research Methods

STAR: ultrafast universal RNA-seq aligner

Alexander Dobin et al.

BIOINFORMATICS (2013)

Article Biochemical Research Methods

Streaming fragment assignment for real-time analysis of sequencing experiments

Adam Roberts et al.

NATURE METHODS (2013)

Article Biochemical Research Methods

Systematic evaluation of spliced alignment programs for RNA-seq data

Par G. Engstrom et al.

NATURE METHODS (2013)

Article Biochemistry & Molecular Biology

The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote

Yang Liao et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Biochemical Research Methods

RSeQC: quality control of RNA-seq experiments

Liguo Wang et al.

BIOINFORMATICS (2012)

Article Biochemical Research Methods

RNA-SeQC: RNA-seq metrics for quality control and process optimization

David S. DeLuca et al.

BIOINFORMATICS (2012)

Article Biochemical Research Methods

Qualimap: evaluating next-generation sequencing alignment data

Fernando Garcia-Alcalde et al.

BIOINFORMATICS (2012)

Article Biochemical Research Methods

Quality control and preprocessing of metagenomic datasets

Robert Schmieder et al.

BIOINFORMATICS (2011)

Article Biochemistry & Molecular Biology

Differential expression in RNA-seq: A matter of depth

Sonia Tarazona et al.

GENOME RESEARCH (2011)

Article Biochemical Research Methods

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

Mark D. Robinson et al.

BIOINFORMATICS (2010)