Related references
Note: Only part of the references are listed.Integrating experimental and literature protein-protein interaction data for protein complex prediction
Yijia Zhang et al.
BMC GENOMICS (2015)
Detecting Protein Complexes from Signed Protein-Protein Interaction Networks
Le Ou-Yang et al.
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS (2015)
Network inference from AP-MS data: computational challenges and solutions
Ben Teng et al.
BRIEFINGS IN BIOINFORMATICS (2015)
Detecting temporal protein complexes from dynamic protein-protein interaction networks
Le Ou-Yang et al.
BMC BIOINFORMATICS (2014)
The binary protein-protein interaction landscape of Escherichia coli
Seesandra V. Rajagopala et al.
NATURE BIOTECHNOLOGY (2014)
Similarity network fusion for aggregating data types on a genomic scale
Bo Wang et al.
NATURE METHODS (2014)
From proteomes to complexomes in the era of systems biology
Trevor Clancy et al.
PROTEOMICS (2014)
Integrative approaches for finding modular structure in biological networks
Koyel Mitra et al.
NATURE REVIEWS GENETICS (2013)
Protein Complex Detection via Weighted Ensemble Clustering Based on Bayesian Nonnegative Matrix Factorization
Le Ou-Yang et al.
PLOS ONE (2013)
Identifying protein complexes from heterogeneous biological data
Min Wu et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2013)
Multifunctional proteins revealed by overlapping clustering in protein interaction network
Emmanuelle Becker et al.
BIOINFORMATICS (2012)
Towards the identification of protein complexes and functional modules by integrating PPI network and gene expression data
Min Li et al.
BMC BIOINFORMATICS (2012)
Discovery of Protein Complexes with Core-Attachment Structures from Tandem Affinity Purification (TAP) Data
Min Wu et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2012)
Detecting overlapping protein complexes in protein-protein interaction networks
Tamas Nepusz et al.
NATURE METHODS (2012)
Exploring Overlapping Functional Units with Various Structure in Protein Interaction Networks
Xiao-Fei Zhang et al.
PLOS ONE (2012)
Consensus clustering in complex networks
Andrea Lancichinetti et al.
SCIENTIFIC REPORTS (2012)
Construction of co-complex score matrix for protein complex prediction from AP-MS data
Zhipeng Xie et al.
BIOINFORMATICS (2011)
A comparison of the functional modules identified from time course and static PPI network data
Xiwei Tang et al.
BMC BIOINFORMATICS (2011)
Graph Regularized Nonnegative Matrix Factorization for Data Representation
Deng Cai et al.
IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE (2011)
A Fast Hierarchical Clustering Algorithm for Functional Modules Discovery in Protein Interaction Networks
Jianxin Wang et al.
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS (2011)
SPICi: a fast clustering algorithm for large biological networks
Peng Jiang et al.
BIOINFORMATICS (2010)
Computational approaches for detecting protein complexes from protein interaction networks: a survey
Xiaoli Li et al.
BMC GENOMICS (2010)
How and when should interactome-derived clusters be used to predict functional modules and protein function?
Jimin Song et al.
BIOINFORMATICS (2009)
Complex discovery from weighted PPI networks
Guimei Liu et al.
BIOINFORMATICS (2009)
RRW: repeated random walks on genome-scale protein networks for local cluster discovery
Kathy Macropol et al.
BMC BIOINFORMATICS (2009)
A core-attachment based method to detect protein complexes in PPI networks
Min Wu et al.
BMC BIOINFORMATICS (2009)
Bootstrapping the Interactome: Unsupervised Identification of Protein Complexes in Yeast
Caroline C. Friedel et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2009)
Up-to-date catalogues of yeast protein complexes
Shuye Pu et al.
NUCLEIC ACIDS RESEARCH (2009)
Ensemble non-negative matrix factorization methods for clustering proteinprotein interactions
Derek Greene et al.
BIOINFORMATICS (2008)
From pull-down data to protein interaction networks and complexes with biological relevance
Bing Zhang et al.
BIOINFORMATICS (2008)
Modifying the DPClus algorithm for identifying protein complexes based on new topological structures
Min Li et al.
BMC BIOINFORMATICS (2008)
Nonnegative Matrix Factorization with Gaussian Process Priors
Mikkel N. Schmidt et al.
Computational Intelligence and Neuroscience (2008)
A high-accuracy consensus map of yeast protein complexes reveals modular nature of gene essentiality
G. Traver Hart et al.
BMC BIOINFORMATICS (2007)
An ensemble framework for clustering protein-protein interaction networks
Sitaram Asur et al.
BIOINFORMATICS (2007)
Identifying functional modules in the physical interactome of Saccharomyces cerevisiae
Shuye Pu et al.
PROTEOMICS (2007)
Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae
Sean R. Collins et al.
MOLECULAR & CELLULAR PROTEOMICS (2007)
Identification of functional modules using network topology and high-throughput data
Igor Ulitsky et al.
BMC SYSTEMS BIOLOGY (2007)
Evaluation of clustering algorithms for protein-protein interaction networks
Sylvain Brohee et al.
BMC BIOINFORMATICS (2006)
CFinder:: locating cliques and overlapping modules in biological networks
B Adamcsek et al.
BIOINFORMATICS (2006)
Development and implementation of an algorithm for detection of protein complexes in large interaction networks
Md Altaf-Ul-Amin et al.
BMC BIOINFORMATICS (2006)
Proteome survey reveals modularity of the yeast cell machinery
AC Gavin et al.
NATURE (2006)
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
NJ Krogan et al.
NATURE (2006)
Protein complex prediction via cost-based clustering
AD King et al.
BIOINFORMATICS (2004)
The Database of Interacting Proteins: 2004 update
L Salwinski et al.
NUCLEIC ACIDS RESEARCH (2004)
MIPS: analysis and annotation of proteins from whole genomes
HW Mewes et al.
NUCLEIC ACIDS RESEARCH (2004)
An automated method for finding molecular complexes in large protein interaction networks
GD Bader et al.
BMC BIOINFORMATICS (2003)
An efficient algorithm for large-scale detection of protein families
AJ Enright et al.
NUCLEIC ACIDS RESEARCH (2002)
Functional organization of the yeast proteome by systematic analysis of protein complexes
AC Gavin et al.
NATURE (2002)
A comprehensive two-hybrid analysis to explore the yeast protein interactome
T Ito et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)