4.6 Article

Scalable metagenomics alignment research tool (SMART): a scalable, rapid, and complete search heuristic for the classification of metagenomic sequences from complex sequence populations

Related references

Note: Only part of the references are listed.
Article Biochemical Research Methods

A two-phase binning algorithm using l-mer frequency on groups of non-overlapping reads

Le Van Vinh et al.

ALGORITHMS FOR MOLECULAR BIOLOGY (2015)

Article Biochemical Research Methods

Clustering of reads with alignment-free measures and quality values

Matteo Comin et al.

ALGORITHMS FOR MOLECULAR BIOLOGY (2015)

Article Biotechnology & Applied Microbiology

CLARK: fast and accurate classification of metagenomic and genomic sequences using discriminative k-mers

Rachid Ounit et al.

BMC GENOMICS (2015)

Article Biochemical Research Methods

Multi-Layer and Recursive Neural Networks for Metagenomic Classification

Gregory Ditzler et al.

IEEE TRANSACTIONS ON NANOBIOSCIENCE (2015)

Article Biochemistry & Molecular Biology

Cloud Computing-Based TagSNP Selection Algorithm for Human Genome Data

Che-Lun Hung et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2015)

Article Biochemical Research Methods

SeqPig: simple and scalable scripting for large sequencing data sets in Hadoop

Andre Schumacher et al.

BIOINFORMATICS (2014)

Article Biochemical Research Methods

Survey of MapReduce frame operation in bioinformatics

Quan Zou et al.

BRIEFINGS IN BIOINFORMATICS (2014)

Article Multidisciplinary Sciences

Bioinformatics on the Cloud Computing Platform Azure

Hugh P. Shanahan et al.

PLOS ONE (2014)

Article Biotechnology & Applied Microbiology

Kraken: ultrafast metagenomic sequence classification using exact alignments

Derrick E. Wood et al.

GENOME BIOLOGY (2014)

Article Biochemical Research Methods

Scalable metagenomic taxonomy classification using a reference genome database

Sasha K. Ames et al.

BIOINFORMATICS (2013)

Article Biotechnology & Applied Microbiology

Alignment-free supervised classification of metagenomes by recursive SVM

Hongfei Cui et al.

BMC GENOMICS (2013)

Article Biochemistry & Molecular Biology

Metagenomic abundance estimation and diagnostic testing on species level

Martin S. Lindner et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Biochemical Research Methods

METAGENOMIC TAXONOMIC CLASSIFICATION USING EXTREME LEARNING MACHINES

Zeehasham Rasheed et al.

JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY (2012)

Article Biochemical Research Methods

FLASH: fast length adjustment of short reads to improve genome assemblies

Tanja Magoc et al.

BIOINFORMATICS (2011)

Article Biotechnology & Applied Microbiology

Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences

Bo Liu et al.

BMC GENOMICS (2011)

Article Biochemical Research Methods

Fast and accurate long-read alignment with Burrows-Wheeler transform

Heng Li et al.

BIOINFORMATICS (2010)

Article Biochemical Research Methods

Cloud computing for comparative genomics

Dennis P. Wall et al.

BMC BIOINFORMATICS (2010)

Article Biochemical Research Methods

An overview of the Hadoop/MapReduce/HBase framework and its current applications in bioinformatics

Ronald C. Taylor

BMC BIOINFORMATICS (2010)

Article Computer Science, Hardware & Architecture

MapReduce: A Flexible Data Processing Tool

Jeffrey Dean et al.

COMMUNICATIONS OF THE ACM (2010)

Article Biochemistry & Molecular Biology

De novo assembly of human genomes with massively parallel short read sequencing

Ruiqiang Li et al.

GENOME RESEARCH (2010)

Article Biochemical Research Methods

Comparison of Statistical Methods to Classify Environmental Genomic Fragments

Gail L. Rosen et al.

IEEE TRANSACTIONS ON NANOBIOSCIENCE (2010)

Article Biochemistry & Molecular Biology

The NIH Human Microbiome Project

Jane Peterson et al.

GENOME RESEARCH (2009)

Article Biochemical Research Methods

Phymm and PhymmBL: metagenomic phylogenetic classification with interpolated Markov models

Arthur Brady et al.

NATURE METHODS (2009)

Article Biotechnology & Applied Microbiology

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Ben Langmead et al.

GENOME BIOLOGY (2009)

Article Computer Science, Hardware & Architecture

Mapreduce: Simplified data processing on large clusters

Jeffrey Dean et al.

COMMUNICATIONS OF THE ACM (2008)

Article Biochemistry & Molecular Biology

GenBank

DA Benson et al.

NUCLEIC ACIDS RESEARCH (2002)