Related references
Note: Only part of the references are listed.Integration of accessibility data from structure probing into RNA-RNA interaction prediction
Milad Miladi et al.
BIOINFORMATICS (2019)
Freiburg RNA tools: a central online resource for RNA-focused research and teaching
Martin Raden et al.
NUCLEIC ACIDS RESEARCH (2018)
GLASSgo - Automated and Reliable Detection of sRNA Homologs From a Single Input Sequence
Steffen C. Lott et al.
FRONTIERS IN GENETICS (2018)
Interactive implementations of thermodynamics-based RNA structure and RNA–RNA interaction prediction approaches for example-driven teaching
Martin Raden et al.
PLoS Computational Biology (2018)
RNA-bioinformatics: Tools, services and databases for the analysis of RNA-based regulation
Rolf Backofen et al.
JOURNAL OF BIOTECHNOLOGY (2017)
IntaRNA 2.0: enhanced and customizable prediction of RNA-RNA interactions
Martin Mann et al.
NUCLEIC ACIDS RESEARCH (2017)
RIblast: an ultrafast RNA-RNA interaction prediction system based on a seed-and-extension approach
Tsukasa Fukunaga et al.
BIOINFORMATICS (2017)
Comparative and integrative analysis of RNA structural profiling data: current practices and emerging questions
Krishna Choudhary et al.
QUANTITATIVE BIOLOGY (2017)
CopraRNA and IntaRNA: predicting small RNA targets, networks and interaction domains
Patrick R. Wright et al.
NUCLEIC ACIDS RESEARCH (2014)
Bioinformatics of prokaryotic RNAs
Rolf Backofen et al.
RNA BIOLOGY (2014)
Planting the seed: target recognition of short guide RNAs
Tim Kunne et al.
TRENDS IN MICROBIOLOGY (2014)
Regulatory RNAS and target mRNA decay in prokaryotes
David Lalaouna et al.
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2013)
Bacterial sRNAs: Regulation in stress
Chee-Hock Hoe et al.
INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY (2013)
Comparative genomics boosts target prediction for bacterial small RNAs
Patrick R. Wright et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Accessibility and conservation General features of bacterial small RNA-mRNA interactions?
Andreas S. Richter et al.
RNA BIOLOGY (2012)
Predicting sRNAs and Their Targets in Bacteria
Wuju Li et al.
GENOMICS PROTEOMICS & BIOINFORMATICS (2012)
RNA Accessibility in cubic time
Stephan H. Bernhart et al.
ALGORITHMS FOR MOLECULAR BIOLOGY (2011)
ViennaRNA Package 2.0
Ronny Lorenz et al.
ALGORITHMS FOR MOLECULAR BIOLOGY (2011)
Regulation by Small RNAs in Bacteria: Expanding Frontiers
Gisela Storz et al.
MOLECULAR CELL (2011)
RNApredator: fast accessibility-based prediction of sRNA targets
Florian Eggenhofer et al.
NUCLEIC ACIDS RESEARCH (2011)
sTarPicker: A Method for Efficient Prediction of Bacterial sRNA Targets Based on a Two-Step Model for Hybridization
Xiaomin Ying et al.
PLOS ONE (2011)
NNDB: the nearest neighbor parameter database for predicting stability of nucleic acid secondary structure
Douglas H. Turner et al.
NUCLEIC ACIDS RESEARCH (2010)
IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions
Anke Busch et al.
BIOINFORMATICS (2008)
Small RNA Binding to 5′ mRNA Coding Region Inhibits Translational Initiation
Marie Bouvier et al.
MOLECULAR CELL (2008)
GenBank
Dennis A. Benson et al.
NUCLEIC ACIDS RESEARCH (2008)
Thermodynamics of RNA-RNA binding
U Mückstein et al.
BIOINFORMATICS (2006)
Target prediction for small, noncoding RNAs in bacteria
Brian Tjaden et al.
NUCLEIC ACIDS RESEARCH (2006)
RNA loop-loop interactions as dynamic functional motifs
C Brunel et al.
BIOCHIMIE (2002)
An unusual structure formed by antisense-target RNA binding involves an extended kissing complex with a four-way junction and a side-by-side helical alignment
FA Kolb et al.
RNA (2000)
Share Paper
