4.7 Article

Probing the solution structure of the E. coli multidrug transporter MdfA using DEER distance measurements with nitroxide and Gd(III) spin labels

Related references

Note: Only part of the references are listed.
Article Chemistry, Physical

In-Cell EPR Distance Measurements on Ubiquitin Labeled with a Rigid PyMTA-Gd(III) Tag

Yin Yang et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2019)

Article Biochemistry & Molecular Biology

Structural Basis of H+-Dependent Conformational Change in a Bacterial MATE Transporter

Tsukasa Kusakizako et al.

STRUCTURE (2019)

Article Chemistry, Inorganic & Nuclear

rDEER: A Modified DEER Sequence for Distance Measurements Using Shaped Pulses

Thorsten Bahrenberg et al.

MAGNETOCHEMISTRY (2019)

Article Biochemistry & Molecular Biology

MMM: A toolbox for integrative structure modeling

Gunnar Jeschke

PROTEIN SCIENCE (2018)

Article Chemistry, Inorganic & Nuclear

Small Gd(III) Tags for Gd(III)-Gd(III) Distance Measurements in Proteins by EPR Spectroscopy

Georgia Prokopiou et al.

INORGANIC CHEMISTRY (2018)

Article Biochemistry & Molecular Biology

A New Critical Conformational Determinant of Multidrug Efflux by an MFS Transporter

Elia Zomot et al.

JOURNAL OF MOLECULAR BIOLOGY (2018)

Article Multidisciplinary Sciences

Sodium and proton coupling in the conformational cycle of a MATE antiporter from Vibrio cholerae

Derek P. Claxton et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)

Article Chemistry, Physical

Small neutral Gd(III) tags for distance measurements in proteins by double electron-electron resonance experiments

Mithun C. Mahawaththa et al.

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2018)

Article Chemistry, Physical

High Sensitivity In-Cell EPR Distance Measurements on Proteins using an Optimized Gd(III) Spin Label

Yin Yang et al.

JOURNAL OF PHYSICAL CHEMISTRY LETTERS (2018)

Article Chemistry, Physical

Time domain simulation of Gd3+-Gd3+ distance measurements by EPR

Nurit Manukovsky et al.

JOURNAL OF CHEMICAL PHYSICS (2017)

Article Biochemical Research Methods

Improved sensitivity for W-band Gd(III)-Gd(III) and nitroxide-nitroxide DEER measurements with shaped pulses

Thorsten Bahrenberg et al.

JOURNAL OF MAGNETIC RESONANCE (2017)

Article Chemistry, Physical

Selective Distance Measurements Using Triple Spin Labeling with Gd3+, Mn2+, and a Nitroxide

Zuyan Wu et al.

JOURNAL OF PHYSICAL CHEMISTRY LETTERS (2017)

Article Multidisciplinary Sciences

Energy transduction and alternating access of the mammalian ABC transporter P-glycoprotein

Brandy Verhalen et al.

NATURE (2017)

Article Chemistry, Physical

Generic tags for Mn(II) and Gd(III) spin labels for distance measurements in proteins

Yin Yang et al.

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2017)

Article Biochemical Research Methods

The multidrug-resistance transporter MdfA from Escherichia coli: crystallization and X-ray diffraction analysis

Kumar Nagarathinam et al.

ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS (2017)

Article Chemistry, Multidisciplinary

Double-Arm Lanthanide Tags Deliver Narrow Gd3+-Gd3+ Distance Distributions in Double Electron-Electron Resonance (DEER) Measurements

Adarshi P. Welegedara et al.

CHEMISTRY-A EUROPEAN JOURNAL (2017)

Article Chemistry, Multidisciplinary

A Reactive, Rigid GdIII Labeling Tag for In-Cell EPR Distance Measurements in Proteins

Yin Yang et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2017)

Article Chemistry, Multidisciplinary

Using Genetically Encodable Self-Assembling GdIII Spin Labels To Make In-Cell Nanometric Distance Measurements

Florencia C. Mascali et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2016)

Article Multidisciplinary Sciences

Structural disorder of monomeric α-synuclein persists in mammalian cells

Francois-Xavier Theillet et al.

NATURE (2016)

Article Biochemistry & Molecular Biology

Lipids modulate the conformational dynamics of a secondary multidrug transporter

Chloe Martens et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2016)

Article Biochemistry & Molecular Biology

Lipids modulate the conformational dynamics of a secondary multidrug transporter

Chloe Martens et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2016)

Article Chemistry, Multidisciplinary

Distance Measurement on an Endogenous Membrane Transporter in E-coli Cells and Native Membranes Using EPR Spectroscopy

Benesh Joseph et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2015)

Review Biophysics

Structural Biology of the Major Facilitator Superfamily Transporters

Nieng Yan

ANNUAL REVIEW OF BIOPHYSICS, VOL 44 (2015)

Article Chemistry, Multidisciplinary

Protein conformation by EPR spectroscopy using gadolinium tags clicked to genetically encoded p-azido-L-phenylalanine

E. H. Abdelkader et al.

CHEMICAL COMMUNICATIONS (2015)

Article Biochemistry & Molecular Biology

Encoded loop-lanthanide-binding tags for long-range distance measurements in proteins by NMR and EPR spectroscopy

Dominic Barthelmes et al.

JOURNAL OF BIOMOLECULAR NMR (2015)

Article Biochemical Research Methods

Gd(III)-Gd(III) distance measurements with chirp pump pulses

Andrin Doll et al.

JOURNAL OF MAGNETIC RESONANCE (2015)

Article Chemistry, Physical

A New Gd3+ Spin Label for Gd3+-Gd3+ Distance Measurements in Proteins Produces Narrow Distance Distributions

Elwy H. Abdelkader et al.

JOURNAL OF PHYSICAL CHEMISTRY LETTERS (2015)

Article Chemistry, Physical

Gd(III)-Gd(III) EPR distance measurements - the range of accessible distances and the impact of zero field splitting

Arina Dalaloyan et al.

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2015)

Article Chemistry, Multidisciplinary

Compact, hydrophilic, lanthanide-binding tags for paramagnetic NMR spectroscopy

M. D. Lee et al.

CHEMICAL SCIENCE (2015)

Article Chemistry, Multidisciplinary

Gd(III)-PyMTA Label Is Suitable for In-Cell EPR

Mian Qi et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2014)

Article Chemistry, Multidisciplinary

Probing Protein Conformation in Cells by EPR Distance Measurements using Gd3+ Spin Labeling

Andrea Martorana et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2014)

Article Biochemistry & Molecular Biology

Protonation drives the conformational switch in the multidrug transporter LmrP

Matthieu Masureel et al.

NATURE CHEMICAL BIOLOGY (2014)

Article Chemistry, Physical

Gd3+ spin labeling for distance measurements by pulse EPR spectroscopy

Daniella Goldfarb

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2014)

Article Chemistry, Multidisciplinary

Gadolinium(III) Spin Labels for High-Sensitivity Distance Measurements in Transmembrane Helices

Erez Matalon et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2013)

Article Biochemical Research Methods

Increasing sensitivity of pulse EPR experiments using echo train detection schemes

F. Mentink-Vigier et al.

JOURNAL OF MAGNETIC RESONANCE (2013)

Article Biochemistry & Molecular Biology

Conformational heterogeneity of the aspartate transporter GltPh

Inga Hanelt et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2013)

Review Chemistry, Physical

DEER Distance Measurements on Proteins

Gunnar Jeschke

ANNUAL REVIEW OF PHYSICAL CHEMISTRY, VOL 63 (2012)

Article Biochemical Research Methods

The global analysis of DEER data

Suzanne Brandon et al.

JOURNAL OF MAGNETIC RESONANCE (2012)

Article Chemistry, Physical

Nanometer-Range Distance Measurement in a Protein Using Mn2+ Tags

Debamalya Banerjee et al.

JOURNAL OF PHYSICAL CHEMISTRY LETTERS (2012)

Article Chemistry, Multidisciplinary

Pulsed ESR Dipolar Spectroscopy for Distance Measurements in Immobilized Spin Labeled Proteins in Liquid Solution

Zhongyu Yang et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2012)

Article Biochemistry & Molecular Biology

Dissection of Mechanistic Principles of a Secondary Multidrug Efflux Protein

Nir Fluman et al.

MOLECULAR CELL (2012)

Article Chemistry, Physical

Spectroscopic selection of distance measurements in a protein dimer with mixed nitroxide and Gd3+ spin labels

Ilia Kaminker et al.

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2012)

Article Chemistry, Physical

High sensitivity and versatility of the DEER experiment on nitroxide radical pairs at Q-band frequencies

Yevhen Polyhach et al.

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2012)

Article Multidisciplinary Sciences

Conformational state of the MscS mechanosensitive channel in solution revealed by pulsed electron-electron double resonance (PELDOR) spectroscopy

Christos Pliotas et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Biochemical Research Methods

DOTA-Amide Lanthanide Tag for Reliable Generation of Pseudocontact Shifts in Protein NMR Spectra

Bim Graham et al.

BIOCONJUGATE CHEMISTRY (2011)

Article Biochemical Research Methods

Pulsed dipolar spectroscopy distance measurements in biomacromolecules labeled with Gd(III) markers

Y. Song et al.

JOURNAL OF MAGNETIC RESONANCE (2011)

Article Biochemical Research Methods

Evaluation of spin labels for in-cell EPR by analysis of nitroxide reduction in cell extract of Xenopus laevis oocytes

Mykhailo Azarkh et al.

JOURNAL OF MAGNETIC RESONANCE (2011)

Article Chemistry, Multidisciplinary

Gadolinium Tagging for High-Precision Measurements of 6 nm Distances in Protein Assemblies by EPR

Hiromasa Yagi et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2011)

Article Chemistry, Multidisciplinary

Nanometer-Scale Distance Measurements in Proteins Using Gd3+ Spin Labeling

Alexey Potapov et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2010)

Review Biochemistry & Molecular Biology

Bacterial multidrug transport through the lens of the major facilitator superfamily

Nir Fluman et al.

BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS (2009)

Article Biochemistry & Molecular Biology

A Promiscuous Conformational Switch in the Secondary Multidrug Transporter MdfA

Nir Fluman et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2009)

Article Biochemistry & Molecular Biology

The Secondary Multidrug/Proton Antiporter MdfA Tolerates Displacements of an Essential Negatively Charged Side Chain

Nadejda Sigal et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2009)

Article Biochemical Research Methods

HYSCORE and DEER with an upgraded 95 GHz pulse EPR spectrometer

Daniella Goldfarb et al.

JOURNAL OF MAGNETIC RESONANCE (2008)

Article Chemistry, Multidisciplinary

Membrane-bound alpha-synuclein forms an extended helix: Long-distance pulsed ESR measurements using vesicles, bicelles, and rodlike micelles

Elka R. Georgieva et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2008)

Article Chemistry, Multidisciplinary

Gd3+ complexes as potential spin labels for high field pulsed EPR distance measurements

Arnold M. Raitsimring et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2007)

Article Multidisciplinary Sciences

Sugar binding induces an outward-facing conformation of LacY

Irina Smirnova et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Biochemistry & Molecular Biology

E-Coli multidrug transporter MdfA is a monomer

Nadejda Sigal et al.

BIOCHEMISTRY (2007)

Article Biochemical Research Methods

Spin pair geometry revealed by high-field DEER in the presence of conformational distributions

Ye. Polyhach et al.

JOURNAL OF MAGNETIC RESONANCE (2007)

Article Physics, Atomic, Molecular & Chemical

DeerAnalysis2006 - a comprehensive software package for analyzing pulsed ELDOR data

G. Jeschke et al.

APPLIED MAGNETIC RESONANCE (2006)

Article Chemistry, Physical

Spectrometer manager: A versatile control software for pulse EPR spectrometers

B Epel et al.

CONCEPTS IN MAGNETIC RESONANCE PART B-MAGNETIC RESONANCE ENGINEERING (2005)

Article Biochemical Research Methods

Dead-time free measurement of dipole-dipole interactions between electron spins

M Pannier et al.

JOURNAL OF MAGNETIC RESONANCE (2000)