4.8 Article

Towards a fully automated algorithm driven platform for biosystems design

Related references

Note: Only part of the references are listed.
Article Pharmacology & Pharmacy

Application of Bayesian Optimization for Pharmaceutical Product Development

Syusuke Sano et al.

JOURNAL OF PHARMACEUTICAL INNOVATION (2020)

Article Biochemical Research Methods

Highly Efficient Single-Pot Scarless Golden Gate Assembly

Mohammad HamediRad et al.

ACS SYNTHETIC BIOLOGY (2019)

Article Biochemical Research Methods

Learned protein embeddings for machine learning

Kevin K. Yang et al.

BIOINFORMATICS (2018)

Article Mathematical & Computational Biology

A method for efficient Bayesian optimization of self-assembly systems from scattering data

Marcus Thomas et al.

BMC SYSTEMS BIOLOGY (2018)

Article Biotechnology & Applied Microbiology

Genome-scale engineering of Saccharomyces cerevisiae with single-nucleotide precision

Zehua Bao et al.

NATURE BIOTECHNOLOGY (2018)

Article Chemistry, Physical

Reinforcement Learning Based Adaptive Sampling: REAPing Rewards by Exploring Protein Conformational Landscapes

Zahra Shamsi et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2018)

Article Chemistry, Multidisciplinary

Phoenics: A Bayesian Optimizer for Chemistry

Florian Hase et al.

ACS CENTRAL SCIENCE (2018)

Review Biotechnology & Applied Microbiology

Engineering biological systems using automated biofoundries

Ran Chao et al.

METABOLIC ENGINEERING (2017)

Article Multidisciplinary Sciences

Automated multiplex genome-scale engineering in yeast

Tong Si et al.

NATURE COMMUNICATIONS (2017)

Article Biochemical Research Methods

Fully Automated One-Step Synthesis of Single-Transcript TALEN Pairs Using a Biological Foundry

Ran Chao et al.

ACS SYNTHETIC BIOLOGY (2017)

Article Microbiology

Host and Pathway Engineering for Enhanced Lycopene Biosynthesis in Yarrowia lipolytica

Cory Schwartz et al.

FRONTIERS IN MICROBIOLOGY (2017)

Article Biotechnology & Applied Microbiology

Combinatorial Pathway Engineering for Optimized Production of the Anti-Malarial FR900098

Todd S. Freestone et al.

BIOTECHNOLOGY AND BIOENGINEERING (2016)

Review Biochemistry & Molecular Biology

Exploring Synthetic and Systems Biology at the University of Edinburgh

Liz Fletcher et al.

BIOCHEMICAL SOCIETY TRANSACTIONS (2016)

Review Biochemistry & Molecular Biology

Engineering Cellular Metabolism

Jens Nielsen et al.

Article Biochemical Research Methods

Sharing Structure and Function in Biological Design with SBOL 2.0

Nicholas Roehner et al.

ACS SYNTHETIC BIOLOGY (2016)

Proceedings Paper Engineering, Chemical

Bayesian Optimization with Dimension Scheduling: Application to Biological Systems

Doniyor Ulmasov et al.

26TH EUROPEAN SYMPOSIUM ON COMPUTER AIDED PROCESS ENGINEERING (ESCAPE), PT A (2016)

Review Biology

Building biological foundries for next-generation synthetic biology

Chao Ran et al.

SCIENCE CHINA-LIFE SCIENCES (2015)

Article Chemistry, Multidisciplinary

Robust optimization of SVM hyperparameters in the classification of bioactive compounds

Wojciech M. Czarnecki et al.

JOURNAL OF CHEMINFORMATICS (2015)

Article Biochemical Research Methods

A Highly Characterized Yeast Toolkit for Modular, Multipart Assembly

Michael E. Lee et al.

ACS SYNTHETIC BIOLOGY (2015)

Editorial Material Biochemistry & Molecular Biology

SBOL Visual: A Graphical Language for Genetic Designs

Jacqueline Y. Quinn et al.

PLOS BIOLOGY (2015)

Review Biotechnology & Applied Microbiology

Toward metabolic engineering in the context of system biology and synthetic biology: advances and prospects

Yanfeng Liu et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2015)

Article Biotechnology & Applied Microbiology

Metabolic pathway optimization using ribosome binding site variants and combinatorial gene assembly

Farnaz F. Nowroozi et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2014)

Article Biotechnology & Applied Microbiology

Production of lycopene by metabolically-engineered Escherichia coli

Tao Sun et al.

BIOTECHNOLOGY LETTERS (2014)

Article Biochemistry & Molecular Biology

Efficient search, mapping, and optimization of multi-protein genetic systems in diverse bacteria

Iman Farasat et al.

MOLECULAR SYSTEMS BIOLOGY (2014)

Article Biotechnology & Applied Microbiology

The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology

Michal Galdzicki et al.

NATURE BIOTECHNOLOGY (2014)

Article Biochemical Research Methods

FairyTALE: A High-Throughput TAL Effector Synthesis Platform

Jing Liang et al.

ACS SYNTHETIC BIOLOGY (2014)

Article Biotechnology & Applied Microbiology

High level production of tyrosinase in recombinant Escherichia coli

Qun Ren et al.

BMC BIOTECHNOLOGY (2013)

Article Biochemistry & Molecular Biology

Expression-level optimization of a multi-enzyme pathway in the absence of a high-throughput assay

Michael E. Lee et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Multidisciplinary Sciences

Navigating the protein fitness landscape with Gaussian processes

Philip A. Romero et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Multidisciplinary Sciences

Modular optimization of multi-gene pathways for fatty acids production in E. coli

Peng Xu et al.

NATURE COMMUNICATIONS (2013)

Review Multidisciplinary Sciences

Engineering the third wave of biocatalysis

U. T. Bornscheuer et al.

NATURE (2012)

Article Biochemistry & Molecular Biology

Customized optimization of metabolic pathways by combinatorial transcriptional engineering

Jing Du et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Biochemistry & Molecular Biology

Modular control of multiple pathways using engineered orthogonal T7 polymerases

Karsten Temme et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Statistics & Probability

REGRESSION ON MANIFOLDS: ESTIMATION OF THE EXTERIOR DERIVATIVE

Anil Aswani et al.

ANNALS OF STATISTICS (2011)

Review Biotechnology & Applied Microbiology

Engineering microbial factories for synthesis of value-added products

Jing Du et al.

JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY (2011)

Review Biochemistry & Molecular Biology

High-Throughput Metabolic Engineering: Advances in Small-Molecule Screening and Selection

Jeffrey A. Dietrich et al.

ANNUAL REVIEW OF BIOCHEMISTRY, VOL 79 (2010)

Article Computer Science, Artificial Intelligence

A Survey on Transfer Learning

Sinno Jialin Pan et al.

IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING (2010)

Article Biotechnology & Applied Microbiology

Automated design of synthetic ribosome binding sites to control protein expression

Howard M. Salis et al.

NATURE BIOTECHNOLOGY (2009)

Article Biochemical Research Methods

Enzymatic assembly of DNA molecules up to several hundred kilobases

Daniel G. Gibson et al.

NATURE METHODS (2009)

Article Multidisciplinary Sciences

The Automation of Science

Ross D. King et al.

SCIENCE (2009)

Article Biotechnology & Applied Microbiology

Global transcription machinery engineering: A new approach for improving cellular phenotype

Hal Alper et al.

METABOLIC ENGINEERING (2007)

Article Biotechnology & Applied Microbiology

Combinatorial engineering of intergenic regions in operons tunes expression of multiple genes

Brian F. Pfleger et al.

NATURE BIOTECHNOLOGY (2006)

Article Biotechnology & Applied Microbiology

Controlling the metabolic flux through the carotenoid pathway using directed mRNA processing and stabilization

CD Smolke et al.

METABOLIC ENGINEERING (2001)

Article Operations Research & Management Science

A taxonomy of global optimization methods based on response surfaces

DR Jones

JOURNAL OF GLOBAL OPTIMIZATION (2001)

Article Biotechnology & Applied Microbiology

Improving lycopene production in Escherichia coli by engineering metabolic control

WR Farmer et al.

NATURE BIOTECHNOLOGY (2000)