4.8 Article

Single-cell RNA-sequencing of herpes simplex virus 1-infected cells connects NRF2 activation to an antiviral program

Related references

Note: Only part of the references are listed.
Article Biotechnology & Applied Microbiology

A comparison of single-cell trajectory inference methods

Wouter Saelens et al.

NATURE BIOTECHNOLOGY (2019)

Article Pharmacology & Pharmacy

RA-839, a selective agonist of Nrf2/ARE pathway, exerts potent anti-rotaviral efficacy in vitro

Upayan Patra et al.

ANTIVIRAL RESEARCH (2019)

Article Biotechnology & Applied Microbiology

Dimensionality reduction for visualizing single-cell data using UMAP

Etienne Becht et al.

NATURE BIOTECHNOLOGY (2019)

Article Biochemistry & Molecular Biology

The role of Nrf2 transcription factor in viral infection

Ali Ramezani et al.

JOURNAL OF CELLULAR BIOCHEMISTRY (2018)

Editorial Material Urology & Nephrology

Bardoxolone-the Phoenix?

Robert D. Toto

JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY (2018)

Article Biotechnology & Applied Microbiology

Integrating single-cell transcriptomic data across different conditions, technologies, and species

Andrew Butler et al.

NATURE BIOTECHNOLOGY (2018)

Review Pharmacology & Pharmacy

Canonical and non-canonical mechanisms of Nrf2 activation

Silva-Islas Carlos Alfredo et al.

PHARMACOLOGICAL RESEARCH (2018)

Article Virology

The use of single-cell RNA-Seq to understand virus-host interactions

Sara Cristinelli et al.

CURRENT OPINION IN VIROLOGY (2018)

Article Biology

Extreme heterogeneity of influenza virus infection in single cells

Alistair B. Russell et al.

ELIFE (2018)

Article Biochemistry & Molecular Biology

Rare Cell Detection by Single-Cell RNA Sequencing as Guided by Single-Molecule RNA FISH

Eduardo Torre et al.

CELL SYSTEMS (2018)

Article Biochemistry & Molecular Biology

Dissection of Influenza Infection In Vivo by Single-Cell RNA Sequencing

Yael Steuerman et al.

CELL SYSTEMS (2018)

Article Biochemistry & Molecular Biology

Comprehensive innate immune profiling of chikungunya virus infection in pediatric cases

Daniela Michlmayr et al.

MOLECULAR SYSTEMS BIOLOGY (2018)

Article Multidisciplinary Sciences

RNA velocity of single cells

Gioele La Manno et al.

NATURE (2018)

Article Multidisciplinary Sciences

Nrf2 negatively regulates STING indicating a link between antiviral sensing and metabolic reprogramming

David Olagnier et al.

NATURE COMMUNICATIONS (2018)

Article Multidisciplinary Sciences

Interleukin-17D and Nrf2 mediate initial innate immune cell recruitment and restrict MCMV infection

Ruth Seelige et al.

SCIENTIFIC REPORTS (2018)

Review Biochemistry & Molecular Biology

The Roles of NRF2 in Modulating Cellular Iron Homeostasis

Michael John Kerins et al.

ANTIOXIDANTS & REDOX SIGNALING (2018)

Article Biology

PiGx: reproducible genomics analysis pipelines with GNU Guix

Ricardo Wurmus et al.

GIGASCIENCE (2018)

Article Biotechnology & Applied Microbiology

SCANPY: large-scale single-cell gene expression data analysis

F. Alexander Wolf et al.

GENOME BIOLOGY (2018)

Article Microbiology

Dynamic Proteomics of Herpes Simplex Virus Infection

Nir Drayman et al.

Article Microbiology

Single-cell analysis identifies cellular markers of the HIV permissive cell

Sylvie Rato et al.

PLOS PATHOGENS (2017)

Review Anatomy & Morphology

Innate Immune Mechanisms and Herpes Simplex Virus Infection and Disease

Evelyn A. Kurt-Jones et al.

CELL BIOLOGY OF HERPES VIRUSES (2017)

Article Biochemical Research Methods

destiny: diffusion maps for large-scale single cell data in R

Philipp Angerer et al.

BIOINFORMATICS (2016)

Editorial Material Cell Biology

Nrf2: not lost in translation

Robert G. Hawley et al.

AGING-US (2016)

Article Biochemical Research Methods

Complex heatmaps reveal patterns and correlations in multidimensional genomic data

Zuguang Gu et al.

BIOINFORMATICS (2016)

Article Biochemistry & Molecular Biology

Tumour-necrosis factor-α induces heparan sulfate 6-O-endosulfatase 1 (Sulf-1) expression in fibroblasts

Anne-Sophie Sikora et al.

INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY (2016)

Article Biochemistry & Molecular Biology

Copper diethyldithiocarbamate as an activator of Nrf2 in cultured vascular endothelial cells

Tomoya Fujie et al.

JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY (2016)

Article Biochemical Research Methods

Diffusion pseudotime robustly reconstructs lineage branching

Laleh Haghverdi et al.

NATURE METHODS (2016)

Article Multidisciplinary Sciences

Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq

Itay Tirosh et al.

SCIENCE (2016)

Review Virology

Evasion of host antiviral innate immunity by HSV-1, an update

Chenhe Su et al.

VIROLOGY JOURNAL (2016)

Article Biochemistry & Molecular Biology

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

Evan Z. Macosko et al.

Article Biochemical Research Methods

QuasR: quantification and annotation of short reads in R

Dimos Gaidatzis et al.

BIOINFORMATICS (2015)

Article Virology

Identification of Herpesvirus Proteins That Contribute to G1/S Arrest

Patrick Paladino et al.

JOURNAL OF VIROLOGY (2014)

Article Biochemical Research Methods

STAR: ultrafast universal RNA-seq aligner

Alexander Dobin et al.

BIOINFORMATICS (2013)

Article Biotechnology & Applied Microbiology

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

Daehwan Kim et al.

GENOME BIOLOGY (2013)

Article Biochemistry & Molecular Biology

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

Davis J. McCarthy et al.

NUCLEIC ACIDS RESEARCH (2012)

Review Microbiology

The many roles of the highly interactive HSV protein ICP27, a key regulator of infection

Rozanne M. Sandri-Goldin

FUTURE MICROBIOLOGY (2011)