4.7 Article

Metagenomic analysis of microbial consortia enriched from compost: new insights into the role of Actinobacteria in lignocellulose decomposition

Related references

Note: Only part of the references are listed.
Article Biotechnology & Applied Microbiology

New insights into the structure and dynamics of actinomycetal community during manure composting

Cheng Wang et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2014)

Article Biotechnology & Applied Microbiology

Discovery and characterization of ionic liquid-tolerant thermophilic cellulases from a switchgrass-adapted microbial community

John M. Gladden et al.

BIOTECHNOLOGY FOR BIOFUELS (2014)

Article Biotechnology & Applied Microbiology

Phylogenetic Distribution of Potential Cellulases in Bacteria

Renaud Berlemont et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)

Article Biochemical Research Methods

Metagenomic species profiling using universal phylogenetic marker genes

Shinichi Sunagawa et al.

NATURE METHODS (2013)

Article Biochemical Research Methods

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data

Evguenia Kopylova et al.

BIOINFORMATICS (2012)

Article Biotechnology & Applied Microbiology

A versatile toolkit for high throughput functional genomics with Trichoderma reesei

Andre Schuster et al.

BIOTECHNOLOGY FOR BIOFUELS (2012)

Article Biotechnology & Applied Microbiology

Glycoside Hydrolases from a targeted Compost Metagenome, activity-screening and functional characterization

Michael J. Dougherty et al.

BMC BIOTECHNOLOGY (2012)

Article Biochemical Research Methods

Metagenomic microbial community profiling using unique clade-specific marker genes

Nicola Segata et al.

NATURE METHODS (2012)

Article Biochemistry & Molecular Biology

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

Yanbin Yin et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Multidisciplinary Sciences

Genomics of Aerobic Cellulose Utilization Systems in Actinobacteria

Iain Anderson et al.

PLOS ONE (2012)

Article Multidisciplinary Sciences

Functional diversity within the simple gut microbiota of the honey bee

Philipp Engel et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Biochemistry & Molecular Biology

Isolation and Characterization of CcAbf62A, a GH62 α-L-Arabinofuranosidase, from the Basidiomycete Coprinopsis cinerea

Kohsuke Hashimoto et al.

BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY (2011)

Review Biochemical Research Methods

The emerging role for bacteria in lignin degradation and bio-product formation

Timothy D. H. Bugg et al.

CURRENT OPINION IN BIOTECHNOLOGY (2011)

Article Multidisciplinary Sciences

Structural insights into a unique cellulase fold and mechanism of cellulose hydrolysis

Joana L. A. Bras et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Multidisciplinary Sciences

Evidence of cellulose metabolism by the giant panda gut microbiome

Lifeng Zhu et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Multidisciplinary Sciences

Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen

Matthias Hess et al.

SCIENCE (2011)

Article Multidisciplinary Sciences

Identification and characterization of a multidomain hyperthermophilic cellulase from an archaeal enrichment

Joel E. Graham et al.

NATURE COMMUNICATIONS (2011)

Article Agricultural Engineering

Characterization of thermostable cellulases produced by Bacillus and Geobacillus strains

Gurdeep Rastogi et al.

BIORESOURCE TECHNOLOGY (2010)

Article Biotechnology & Applied Microbiology

Analysis of a thermophilic lignocellulose degrading microbial consortium and multi-species lignocellulolytic enzyme system

Sarunyou Wongwilaiwalin et al.

ENZYME AND MICROBIAL TECHNOLOGY (2010)

Article Biochemistry & Molecular Biology

De novo assembly of human genomes with massively parallel short read sequencing

Ruiqiang Li et al.

GENOME RESEARCH (2010)

Article Multidisciplinary Sciences

A human gut microbial gene catalogue established by metagenomic sequencing

Junjie Qin et al.

NATURE (2010)

Article Multidisciplinary Sciences

Targeted Discovery of Glycoside Hydrolases from a Switchgrass-Adapted Compost Community

Martin Allgaier et al.

PLOS ONE (2010)

Article Multidisciplinary Sciences

Adaptation to herbivory by the Tammar wallaby includes bacterial and glycoside hydrolase profiles different from other herbivores

P. B. Pope et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Biotechnology & Applied Microbiology

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

Patrick D. Schloss et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)

Review Biochemical Research Methods

Plant biomass degradation by gut microbiomes: more of the same or something new?

Mark Morrison et al.

CURRENT OPINION IN BIOTECHNOLOGY (2009)

Article Biochemistry & Molecular Biology

Circos: An information aesthetic for comparative genomics

Martin Krzywinski et al.

GENOME RESEARCH (2009)

Review Engineering, Chemical

Methods for Pretreatment of Lignocellulosic Biomass for Efficient Hydrolysis and Biofuel Production

Parveen Kumar et al.

INDUSTRIAL & ENGINEERING CHEMISTRY RESEARCH (2009)

Article Biochemistry & Molecular Biology

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

J. R. Cole et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Multidisciplinary Sciences

Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases

Jennifer M. Brulc et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Genetics & Heredity

Complete genome sequence of Stackebrandtia nassauensis type strain (LLR-40K-21(T))

Chris Munk et al.

STANDARDS IN GENOMIC SCIENCES (2009)

Review Microbiology

Ins and Outs of Major Facilitator Superfamily, Antiporters

Christopher J. Law et al.

ANNUAL REVIEW OF MICROBIOLOGY (2008)

Review Plant Sciences

Pectin structure and biosynthesis

Debra Mohnen

CURRENT OPINION IN PLANT BIOLOGY (2008)

Editorial Material Biochemistry & Molecular Biology

LysM, a widely distributed protein motif for binding to (peptido)glycans

Girbe Buist et al.

MOLECULAR MICROBIOLOGY (2008)

Editorial Material Biotechnology & Applied Microbiology

How biotech can transform biofuels

Lee R. Lynd et al.

NATURE BIOTECHNOLOGY (2008)

Review Microbiology

Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis

Harry J. Flint et al.

NATURE REVIEWS MICROBIOLOGY (2008)

Article Biochemistry & Molecular Biology

MEGAN analysis of metagenomic data

Daniel H. Huson et al.

GENOME RESEARCH (2007)

Review Microbiology

How phosphotransferase system-related protein phosphorylation regulates carbohydrate metabolism in bacteria

Josef Deutscher et al.

MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2006)

Article Soil Science

Cellulases (CMCases) and polyphenol oxidases from thermophilic Bacillus spp. isolated from compost

Lungisa Mayende et al.

SOIL BIOLOGY & BIOCHEMISTRY (2006)

Article Biochemistry & Molecular Biology

Evaluation of two different aeration systems for composting two-phase olive mill wastes

ML Cayuela et al.

PROCESS BIOCHEMISTRY (2006)

Article Biochemistry & Molecular Biology

Characterization of the maturing process of cattle manure compost

JC Tang et al.

PROCESS BIOCHEMISTRY (2006)

Article Biotechnology & Applied Microbiology

Several archaeal homologs of putative oligopeptide-binding proteins encoded by Thermotoga maritima bind sugars

DA Nanavati et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2006)

Article Microbiology

Stackebrandtia nassauensis gen. nov., sp nov and emended description of the family Glycomycetaceae

DP Labeda et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2005)

Review Biochemistry & Molecular Biology

Carbohydrate-binding modules: fine-tuning polysaccharide recognition

AB Boraston et al.

BIOCHEMICAL JOURNAL (2004)

Article Biotechnology & Applied Microbiology

Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78

D Martinez et al.

NATURE BIOTECHNOLOGY (2004)

Article Agricultural Engineering

Enhanced production of pectinase by Bacillus sp DT7 using solid state fermentation

DR Kashyap et al.

BIORESOURCE TECHNOLOGY (2003)

Article Biotechnology & Applied Microbiology

Production and characterization of thermostable cellulases from Streptomyces transformant T3-1

HD Jang et al.

WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY (2003)

Article Agricultural Engineering

Microbial characterization during composting of municipal solid waste

A Hassen et al.

BIORESOURCE TECHNOLOGY (2001)

Article Agricultural Engineering

Biodegradation of lignin in a compost environment:: a review

M Tuomela et al.

BIORESOURCE TECHNOLOGY (2000)