4.5 Article

Inferring targeting modes of Argonaute-loaded tRNA fragments

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

Ensembl 2017

Bronwen L. Aken et al.

NUCLEIC ACIDS RESEARCH (2017)

Article Multidisciplinary Sciences

Identification of functional tetramolecular RNA G-quadruplexes derived from transfer RNAs

Shawn M. Lyons et al.

NATURE COMMUNICATIONS (2017)

Article Biochemical Research Methods

MINTbase: a framework for the interactive exploration of mitochondrial and nuclear tRNA fragments

Venetia Pliatsika et al.

BIOINFORMATICS (2016)

Article Biotechnology & Applied Microbiology

High-throughput discovery of post-transcriptional cis-regulatory elements

Erin M. Wissink et al.

BMC GENOMICS (2016)

Review Biochemistry & Molecular Biology

MicroRNA in Control of Gene Expression: An Overview of Nuclear Functions

Caterina Catalanotto et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2016)

Article Multidisciplinary Sciences

Dysregulation of a family of short noncoding RNAs, tsRNAs, in human cancer

Yuri Pekarsky et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Article Multidisciplinary Sciences

Argonaute-associated short introns are a novel class of gene regulators

Thomas B. Hansen et al.

NATURE COMMUNICATIONS (2016)

Article Biochemical Research Methods

Analysis of Nearly One Thousand Mammalian Mirtrons Reveals Novel Features of Dicer Substrates

Jiayu Wen et al.

PLOS COMPUTATIONAL BIOLOGY (2015)

Review Biochemistry & Molecular Biology

tRNA fragments in human health and disease

Paul Anderson et al.

FEBS LETTERS (2014)

Article Biochemistry & Molecular Biology

Natural antisense transcripts

Olga Khorkova et al.

HUMAN MOLECULAR GENETICS (2014)

Review Biochemistry & Molecular Biology

Import routes and nuclear functions of Argonaute and other small RNA-silencing proteins

Daniel Schraivogel et al.

TRENDS IN BIOCHEMICAL SCIENCES (2014)

Article Genetics & Heredity

tRNADB-CE: tRNA gene database well-timed in the era of big sequence data

Takashi Abe et al.

Frontiers in Genetics (2014)

Article Biochemistry & Molecular Biology

Mapping the Human miRNA Interactome by CLASH Reveals Frequent Noncanonical Binding

Aleksandra Helwak et al.

Review Biochemistry & Molecular Biology

The functions of natural antisense transcripts

Megan Wight et al.

ROLE OF NON-CODING RNAS IN BIOLOGY (2013)

Article Biochemistry & Molecular Biology

Analysis of CDS-located miRNA target sites suggests that they can effectively inhibit translation

Jean Hausser et al.

GENOME RESEARCH (2013)

Article Multidisciplinary Sciences

tRNA-derived microRNA modulates proliferation and the DNA damage response and is down-regulated in B cell lymphoma

Roy L. Maute et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Biochemistry & Molecular Biology

Genome-wide Identification and Quantitative Analysis of Cleaved tRNA Fragments Induced by Cellular Stress

Mridusmita Saikia et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2012)

Article Biochemistry & Molecular Biology

Argonaute proteins couple chromatin silencing to alternative splicing

Maya Ameyar-Zazoua et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2012)

Article Biochemistry & Molecular Biology

Extensive terminal and asymmetric processing of small RNAs from rRNAs, snoRNAs, snRNAs, and tRNAs

Zhihua Li et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Biochemistry & Molecular Biology

Conservation of the relative tRNA composition in healthy and cancerous tissues

Shelly Mahlab et al.

Article Microbiology

tRNA-Derived Fragments Target the Ribosome and Function as Regulatory Non-Coding RNA in Haloferax volcanii

Jennifer Gebetsberger et al.

ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL (2012)

Article Biochemical Research Methods

FIMO: scanning for occurrences of a given motif

Charles E. Grant et al.

BIOINFORMATICS (2011)

Article Biochemistry & Molecular Biology

What are natural antisense transcripts good for?

Andreas Werner et al.

BIOCHEMICAL SOCIETY TRANSACTIONS (2010)

Article Biochemistry & Molecular Biology

Expanding the MicroRNA Targeting Code: Functional Sites with Centered Pairing

Chanseok Shin et al.

MOLECULAR CELL (2010)

Review Biochemistry & Molecular Biology

Many ways to generate microRNA-like small RNAs: non-canonical pathways for microRNA production

Keita Miyoshi et al.

MOLECULAR GENETICS AND GENOMICS (2010)

Article Multidisciplinary Sciences

A Dicer-independent miRNA biogenesis pathway that requires Ago catalysis

Sihem Cheloufi et al.

NATURE (2010)

Article Multidisciplinary Sciences

A Novel miRNA Processing Pathway Independent of Dicer Requires Argonaute2 Catalytic Activity

Daniel Cifuentes et al.

SCIENCE (2010)

Article Biochemistry & Molecular Biology

Stress induces tRNA cleavage by angiogenin in mammalian cells

Hanjiang Fu et al.

FEBS LETTERS (2009)

Article Cell Biology

A novel class of small RNAs: tRNA-derived RNA fragments (tRFs)

Yong Sun Lee et al.

GENES & DEVELOPMENT (2009)

Article Biochemistry & Molecular Biology

New class of microRNA targets containing simultaneous 5′-UTR and 3′-UTR interaction sites

Inhan Lee et al.

GENOME RESEARCH (2009)

Article Cell Biology

Angiogenin cleaves tRNA and promotes stress-induced translational repression

Satoshi Yamasaki et al.

JOURNAL OF CELL BIOLOGY (2009)

Article Biochemistry & Molecular Biology

Control of alternative splicing through siRNA-mediated transcriptional gene silencing

Mariano Allo et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2009)

Article Biochemistry & Molecular Biology

GtRNAdb: a database of transfer RNA genes detected in genomic sequence

Patricia P. Chan et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Biochemistry & Molecular Biology

tRNAdb 2009: compilation of tRNA sequences and tRNA genes

Frank Juehling et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Biochemistry & Molecular Biology

MEME SUITE: tools for motif discovery and searching

Timothy L. Bailey et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Biotechnology & Applied Microbiology

Hidden layers of human small RNAs

Hideya Kawaji et al.

BMC GENOMICS (2008)

Article Biochemical Research Methods

Discovering sequence motifs with arbitrary insertions and deletions

Martin C. Frith et al.

PLOS COMPUTATIONAL BIOLOGY (2008)

Article Biotechnology & Applied Microbiology

Identification of motifs that function in the splicing of non-canonical introns

Jill I. Murray et al.

GENOME BIOLOGY (2008)

Article Biochemistry & Molecular Biology

RNAhybrid:: microRNA target prediction easy, fast and flexible

Jan Krueger et al.

NUCLEIC ACIDS RESEARCH (2006)