Journal
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Volume 116, Issue 51, Pages 25456-25461Publisher
NATL ACAD SCIENCES
DOI: 10.1073/pnas.1915314116
Keywords
F-ATPase; single-molecule imaging; concerted dynamics; 4-state model; ADP release
Categories
Funding
- Office of the Naval Research
- Army Research Office
- James W. Glanville Foundation
- Society of Interdisciplinary Research
- Hong Kong University of Science and Technology [IGN17SC04, R9418]
Ask authors/readers for more resources
A method is proposed for analyzing fast (10 mu s) single-molecule rotation trajectories in F-1 adenosinetriphosphatase (F-1-ATPase). This method is based on the distribution of jumps in the rotation angle that occur in the transitions during the steps between subsequent catalytic dwells. The method is complementary to the stalling technique devised by H. Noji et al. [Biophys. Rev. 9, 103-118, 2017], and can reveal multiple states not directly detectable as steps. A bimodal distribution of jumps is observed at certain angles, due to the system being in either of 2 states at the same rotation angle. In this method, a multistate theory is used that takes into account a viscoelastic fluctuation of the imaging probe. Using an established sequence of 3 specific states, a theoretical profile of angular jumps is predicted, without adjustable parameters, that agrees with experiment for most of the angular range. Agreement can be achieved at all angles by assuming a fourth state with an similar to 10 mu s lifetime and a dwell angle about 40 degrees after the adenosine 5'-triphosphate (ATP) binding dwell. The latter result suggests that the ATP binding in one beta subunit and the adenosine 5'-diphosphate (ADP) release from another beta subunit occur via a transient whose lifetime is similar to 10 mu s and is about 6 orders of magnitude smaller than the lifetime for ADP release from a singly occupied F-1-ATPase. An internal consistency test is given by comparing 2 independent ways of obtaining the relaxation time of the probe. They agree and are similar to 15 mu s.
Authors
I am an author on this paper
Click your name to claim this paper and add it to your profile.
Reviews
Recommended
No Data Available