Journal
NUCLEIC ACIDS RESEARCH
Volume 48, Issue D1, Pages D87-D92Publisher
OXFORD UNIV PRESS
DOI: 10.1093/nar/gkz1001
Keywords
-
Categories
Funding
- Norwegian Research Council [288404, 187615]
- Helse Sor-Ost
- University of Oslo through the Centre for Molecular Medicine Norway (NCMM)
- Norwegian Cancer Society [197884]
- Canadian Institutes of Health Research [BOP-149430, PJT-162120]
- Genome Canada
- Genome British Columbia [SIP007, 255ONT, 275SIL]
- Michael Smith Foundation for Health Research [17746]
- Natural Sciences and Engineering Research Council of Canada [RGPIN-2017-06824]
- Weston Brain Institute [20R74681]
- CREATE programs
- Netherlands Organization for Scientific Research [452172015]
- Lundbeck Foundation
- Danish Cancer Foundation
- Danish Innovation Fund
- Danish Council for Independent Research
- French National Agency for Research [FloPiNet ANR-16-CE920023-01, ANR-10-LABX-49-01]
- Rutherford Fund Fellowship
- BC Children's Hospital Foundation andResearch Institute
- BBSRC [BB/N023358/1] Funding Source: UKRI
- MRC [MC_UP_1102/1, MC_EX_MR/S300007/1] Funding Source: UKRI
Ask authors/readers for more resources
JASPAR (http://jaspar.genereg.net) is an open-access database of curated, non-redundant transcription factor (TF)-binding profiles stored as position frequency matrices (PFMs) for TFs across multiple species in six taxonomic groups. In this 8th release of JASPAR, the CORE collection has been expanded with 245 new PFMs (169 for vertebrates, 42 for plants, 17 for nematodes, 10 for insects, and 7 for fungi), and 156 PFMs were updated (125 for vertebrates, 28 for plants and 3 for insects). These new profiles represent an 18% expansion compared to the previous release. JASPAR 2020 comes with a novel collection of unvalidated TF-binding profiles for which our curators did not find orthogonal supporting evidence in the literature. This collection has a dedicated web form to engage the community in the curation of unvalidated TF-binding profiles. Moreover, we created a Q&A forum to ease the communication between the user community and JASPAR curators. Finally, we updated the genomic tracks, inference tool, and TF-binding profile similarity clusters. All the data is available through the JASPAR website, its associated RESTful API, and through the JASPAR2020 R/Bioconductor package.
Authors
I am an author on this paper
Click your name to claim this paper and add it to your profile.
Reviews
Recommended
No Data Available