4.8 Article

The SCOP database in 2020: expanded classification of representative family and superfamily domains of known protein structures

Journal

NUCLEIC ACIDS RESEARCH
Volume 48, Issue D1, Pages D376-D382

Publisher

OXFORD UNIV PRESS
DOI: 10.1093/nar/gkz1064

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Funding

  1. Medical Research Council, as part of United Kingdom Research and Innovation [MC UP 1201/14]
  2. Medical Research Council (UK)
  3. BBSRC [BB/I024917/1] Funding Source: UKRI
  4. MRC [MC_UP_1201/14, MC_U105192716] Funding Source: UKRI

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The Structural Classification of Proteins (SCOP) database is a classification of protein domains organised according to their evolutionary and structural relationships. We report a major effort to increase the coverage of structural data, aiming to provide classification of almost all domain super-families with representatives in the PDB. We have also improved the database schema, provided a new API and modernised the web interface. This is by far the most significant update in coverage since SCOP 1.75 and builds on the advances in schema from the SCOP 2 prototype.

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