Related references
Note: Only part of the references are listed.The Skyline ecosystem: Informatics for quantitative mass spectrometry proteomics
Lindsay K. Pino et al.
MASS SPECTROMETRY REVIEWS (2020)
The jPOST environment: an integrated proteomics data repository and database
Yuki Moriya et al.
NUCLEIC ACIDS RESEARCH (2019)
iProX: an integrated proteome resource
Jie Ma et al.
NUCLEIC ACIDS RESEARCH (2019)
Prosit: proteome-wide prediction of peptide tandem mass spectra by deep learning
Siegfried Gessulat et al.
NATURE METHODS (2019)
High-quality MS/MS spectrum prediction for data-dependent and data-independent acquisition data analysis
Shivani Tiwary et al.
NATURE METHODS (2019)
Updated MS2PIP web server delivers fast and accurate MS2 peak intensity prediction for multiple fragmentation methods, instruments and labeling techniques
Ralf Gabriels et al.
NUCLEIC ACIDS RESEARCH (2019)
Quantifying the impact of public omics data
Yasset Perez-Riverol et al.
NATURE COMMUNICATIONS (2019)
LNCipedia 5: towards a reference set of human long non-coding RNAs
Pieter-Jan Volders et al.
NUCLEIC ACIDS RESEARCH (2019)
UniProt: a worldwide hub of protein knowledge
Alex Bateman et al.
NUCLEIC ACIDS RESEARCH (2019)
The UCSC Genome Browser database: 2019 update
Maximilian Haeussler et al.
NUCLEIC ACIDS RESEARCH (2019)
The PRIDE database and related tools and resources in 2019: improving support for quantification data
Yasset Perez-Riverol et al.
NUCLEIC ACIDS RESEARCH (2019)
Ensembl 2019
Fiona Cunningham et al.
NUCLEIC ACIDS RESEARCH (2019)
Expression Atlas: gene and protein expression across multiple studies and organisms
Irene Papatheodorou et al.
NUCLEIC ACIDS RESEARCH (2018)
The SysteMHC Atlas project
Wenguang Shao et al.
NUCLEIC ACIDS RESEARCH (2018)
An update on sORFs.org: a repository of small ORFs identified by ribosome profiling
Volodimir Olexiouk et al.
NUCLEIC ACIDS RESEARCH (2018)
ProteomicsDB
Tobias Schmidt et al.
NUCLEIC ACIDS RESEARCH (2018)
Panorama Public: A Public Repository for Quantitative Data Sets Processed in Skyline
Vagisha Sharma et al.
MOLECULAR & CELLULAR PROTEOMICS (2018)
Assembling the Community-Scale Discoverable Human Proteome
Mingxun Wang et al.
CELL SYSTEMS (2018)
ProteinExplorer: A Repository-Scale Resource for Exploration of Protein Detection in Public Mass Spectrometry Data Sets
Benjamin S. Pullman et al.
JOURNAL OF PROTEOME RESEARCH (2018)
The proBAM and proBed standard formats: enabling a seamless integration of genomics and proteomics data
Gerben Menschaert et al.
GENOME BIOLOGY (2018)
The neXtProt knowledgebase on human proteins: 2017 update
Pascale Gaudet et al.
NUCLEIC ACIDS RESEARCH (2017)
The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition
Eric W. Deutsch et al.
NUCLEIC ACIDS RESEARCH (2017)
The Human Plasma Proteome Draft of 2017: Building on the Human Plasma PeptideAtlas from Mass Spectrometry and Complementary Assays
Jochen M. Schwenk et al.
JOURNAL OF PROTEOME RESEARCH (2017)
Proteomics Standards Initiative: Fifteen Years of Progress and Future Work
Eric W. Deutsch et al.
JOURNAL OF PROTEOME RESEARCH (2017)
Discovering and linking public omics data sets using the Omics Discovery Index
Yasset Perez-Riverol et al.
NATURE BIOTECHNOLOGY (2017)
A Golden Age for Working with Public Proteomics Data
Lennart Martens et al.
TRENDS IN BIOCHEMICAL SCIENCES (2017)
PRIDE Inspector Toolsuite: Moving Toward a Universal Visualization Tool for Proteomics Data Standard Formats and Quality Assessment of ProteomeXchange Datasets
Yasset Perez-Riverol et al.
MOLECULAR & CELLULAR PROTEOMICS (2016)
Exploring the potential of public proteomics data
Marc Vaudel et al.
PROTEOMICS (2016)
Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 2.1
Eric W. Deutsch et al.
JOURNAL OF PROTEOME RESEARCH (2016)
Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking
Mingxun Wang et al.
NATURE BIOTECHNOLOGY (2016)
Recognizing millions of consistently unidentified spectra across hundreds of shotgun proteomics datasets
Johannes Griss et al.
NATURE METHODS (2016)
Comment: The FAIR Guiding Principles for scientific data management and stewardship
Mark D. Wilkinson et al.
SCIENTIFIC DATA (2016)
ms-data-core-api: an open-source, metadata-oriented library for computational proteomics
Yasset Perez-Riverol et al.
BIOINFORMATICS (2015)
PeptideShaker enables reanalysis of MS-derived proteomics data sets
Marc Vaudel et al.
NATURE BIOTECHNOLOGY (2015)
Introducing the PRIDE Archive RESTful web services
Florian Reisinger et al.
NUCLEIC ACIDS RESEARCH (2015)
The mzTab Data Exchange Format: Communicating Mass-spectrometry-based Proteomics and Metabolomics Experimental Results to a Wider Audience
Johannes Griss et al.
MOLECULAR & CELLULAR PROTEOMICS (2014)
ProteomeXchange provides globally coordinated proteomics data submission and dissemination
Juan A. Vizcaino et al.
NATURE BIOTECHNOLOGY (2014)
The mzIdentML Data Standard for Mass Spectrometry-Based Proteomics Results
Andrew R. Jones et al.
MOLECULAR & CELLULAR PROTEOMICS (2012)
PASSEL: The PeptideAtlas SRM experiment library
Terry Farrah et al.
PROTEOMICS (2012)
PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows
Eric W. Deutsch et al.
EMBO REPORTS (2008)
Open source system for analyzing, validating, and storing protein identification data
R Craig et al.
JOURNAL OF PROTEOME RESEARCH (2004)