Related references
Note: Only part of the references are listed.Latent variable modeling for the microbiome
Kris Sankaran et al.
BIOSTATISTICS (2019)
Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases
Jason Lloyd-Price et al.
NATURE (2019)
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
Evan Bolyen et al.
NATURE BIOTECHNOLOGY (2019)
Establishing microbial composition measurement standards with reference frames
James T. Morton et al.
NATURE COMMUNICATIONS (2019)
Predictive metabolomic profiling of microbial communities using amplicon or metagenomic sequences
Himel Mallick et al.
NATURE COMMUNICATIONS (2019)
Advances in Principal Balances for Compositional Data
J. A. Martin-Fernandez et al.
MATHEMATICAL GEOSCIENCES (2018)
Best practices for analysing microbiomes
Rob Knight et al.
NATURE REVIEWS MICROBIOLOGY (2018)
Linking soil biology and chemistry in biological soil crust using isolate exometabolomics
Tami L. Swenson et al.
NATURE COMMUNICATIONS (2018)
Fungi stabilize connectivity in the lung and skin microbial ecosystems
Laura Tipton et al.
MICROBIOME (2018)
Niche partitioning of a pathogenic microbiome driven by chemical gradients
Robert A. Quinn et al.
SCIENCE ADVANCES (2018)
Rhamnolipids from Pseudomonas aeruginosa disperse the biofilms of sulfate-reducing bacteria
Thammajun L. Wood et al.
NPJ BIOFILMS AND MICROBIOMES (2018)
Commensal Propionibacterium strain UF1 mitigates intestinal inflammation via Th17 cell regulation
Natacha Colliou et al.
JOURNAL OF CLINICAL INVESTIGATION (2017)
Quantitative microbiome profiling links gut community variation to microbial load
Doris Vandeputte et al.
NATURE (2017)
Inflammation-induced IgA+ cells dismantle anti-liver cancer immunity
Shabnam Shalapour et al.
NATURE (2017)
mixOmics: An R package for 'omics feature selection and multiple data integration
Florian Rohart et al.
PLOS COMPUTATIONAL BIOLOGY (2017)
Microbiome Datasets Are Compositional: And This Is Not Optional
Gregory B. Gloor et al.
FRONTIERS IN MICROBIOLOGY (2017)
Combining selected immunomodulatory Propionibacterium freudenreichii and Lactobacillus delbrueckii strains: Reverse engineering development of an anti-inflammatory cheese
Coline Ple et al.
MOLECULAR NUTRITION & FOOD RESEARCH (2016)
Dimension reduction techniques for the integrative analysis of multi-omics data
Chen Meng et al.
BRIEFINGS IN BIOINFORMATICS (2016)
Immunomodulation properties of multi-species fermented milks
Benoit Foligne et al.
FOOD MICROBIOLOGY (2016)
Correlation detection strategies in microbial data sets vary widely in sensitivity and precision
Sophie Weiss et al.
ISME JOURNAL (2016)
Klebsiella pneumoniae: Going on the Offense with a Strong Defense
Michelle K. Paczosa et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2016)
Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking
Mingxun Wang et al.
NATURE BIOTECHNOLOGY (2016)
A multi-omic future for microbiome studies
Janet K. Jansson et al.
NATURE MICROBIOLOGY (2016)
Metabolic Model-Based Integration of Microbiome Taxonomic and Metabolomic Profiles Elucidates Mechanistic Links between Ecological and Metabolic Variation
Cecilia Noecker et al.
MSYSTEMS (2016)
Exometabolite niche partitioning among sympatric soil bacteria
Richard Baran et al.
NATURE COMMUNICATIONS (2015)
Sparse and Compositionally Robust Inference of Microbial Ecological Networks
Zachary D. Kurtz et al.
PLOS COMPUTATIONAL BIOLOGY (2015)
Proportionality: A Valid Alternative to Correlation for Relative Data
David Lovell et al.
PLOS COMPUTATIONAL BIOLOGY (2015)
A Winogradsky-based culture system shows an association between microbial fermentation and cystic fibrosis exacerbation
Robert A. Quinn et al.
ISME JOURNAL (2015)
PLS-DA for compositional data with application to metabolomics
Alzbeta Kalivodova et al.
JOURNAL OF CHEMOMETRICS (2015)
Similarity network fusion for aggregating data types on a genomic scale
Bo Wang et al.
NATURE METHODS (2014)
EMPeror: a tool for visualizing high-throughput microbial community data
Yoshiki Vázquez-Baeza et al.
GigaScience (2013)
Interkingdom metabolic transformations captured by microbial imaging mass spectrometry
Wilna J. Moree et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Inferring Correlation Networks from Genomic Survey Data
Jonathan Friedman et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
Metabolomics of Fecal Extracts Detects Altered Metabolic Activity of Gut Microbiota in Ulcerative Colitis and Irritable Bowel Syndrome
Gwenaelle Le Gall et al.
JOURNAL OF PROTEOME RESEARCH (2011)
A penalized matrix decomposition, with applications to sparse principal components and canonical correlation analysis
Daniela M. Witten et al.
BIOSTATISTICS (2009)
MATRIX FACTORIZATION TECHNIQUES FOR RECOMMENDER SYSTEMS
Yehuda Koren et al.
COMPUTER (2009)
Propionibacterium freudenreichii component 1.4-dihydroxy-2-naphthoic acid (DHNA) attenuates dextran sodium sulphate induced colitis by modulation of bacterial flora and lymphocyte homing
Y Okada et al.
GUT (2006)
Pyocyanin production by Pseudomonas aeruginosa induces neutrophil apoptosis and impairs neutrophil-mediated host defenses in vivo
L Allen et al.
JOURNAL OF IMMUNOLOGY (2005)
The interaction between bacteria and bile
M Begley et al.
FEMS MICROBIOLOGY REVIEWS (2005)
Charge competition and the linear dynamic range of detection in electrospray ionization mass spectrometry
KQ Tang et al.
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY (2004)
Strategies for the assessment of matrix effect in quantitative bioanalytical methods based on HPLC-MS/MS
BK Matuszewski et al.
ANALYTICAL CHEMISTRY (2003)
Pseudomonas aeruginosa rhamnolipids:: biosynthesis and potential applications
RM Maier et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2000)
Mechanistic investigation of ionization suppression in electrospray ionization
R King et al.
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY (2000)