4.8 Article

In situ readout of DNA barcodes and single base edits facilitated by in vitro transcription

Related references

Note: Only part of the references are listed.
Article Multidisciplinary Sciences

Transcriptome-scale super-resolved imaging in tissues by RNA seqFISH

Chee-Huat Linus Eng et al.

NATURE (2019)

Article Multidisciplinary Sciences

Molecular recording of mammalian embryogenesis

Michelle M. Chan et al.

NATURE (2019)

Article Biochemistry & Molecular Biology

Constitutive splicing and economies of scale in gene expression

Fangyuan Ding et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2019)

Article Biochemistry & Molecular Biology

DNA Microscopy: Optics-free Spatio-genetic Imaging by a Stand-Alone Chemical Reaction

Joshua A. Weinstein et al.

Article Multidisciplinary Sciences

High-fidelity amplified FISH for the detection and allelic discrimination of single mRNA molecules

Salvatore A. E. Marras et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)

Article Biochemistry & Molecular Biology

Single-Nucleotide-Resolution Computing and Memory in Living Cells

Fahim Farzadfard et al.

MOLECULAR CELL (2019)

Article Biochemistry & Molecular Biology

Optical Pooled Screens in Human Cells

David Feldman et al.

Article Biotechnology & Applied Microbiology

ClampFISH detects indivicual nucleic acid molecules using click chemistry-based amplification

Sara H. Rouhanifard et al.

NATURE BIOTECHNOLOGY (2019)

Article Biochemistry & Molecular Biology

Efficient in situ barcode sequencing using padlock probe-based BaristaSeq

Xiaoyin Chen et al.

NUCLEIC ACIDS RESEARCH (2018)

Article Biochemistry & Molecular Biology

Dynamics and Spatial Genomics of the Nascent Transcriptome by Intron seqFISH

Sheel Shah et al.

Article Multidisciplinary Sciences

Whole-organism clone tracing using single-cell sequencing

Anna Alemany et al.

NATURE (2018)

Article Biotechnology & Applied Microbiology

Base editing with a Cpf1-cytidine deaminase fusion

Xiaosa Li et al.

NATURE BIOTECHNOLOGY (2018)

Article Biotechnology & Applied Microbiology

Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain

Bushra Raj et al.

NATURE BIOTECHNOLOGY (2018)

Article Biotechnology & Applied Microbiology

Simultaneous lineage tracing and cell-type identification using CRISPR-Cas9-induced genetic scars

Bastiaan Spanjaard et al.

NATURE BIOTECHNOLOGY (2018)

Article Multidisciplinary Sciences

Rewritable multi-event analog recording in bacterial and mammalian cells

Weixin Tang et al.

SCIENCE (2018)

Article Multidisciplinary Sciences

Three-dimensional intact-tissue sequencing of single-cell transcriptional states

Xiao Wang et al.

SCIENCE (2018)

Article Engineering, Biomedical

Prediction of off-target activities for the end-to-end design of CRISPR guide RNAs

Jennifer Listgarten et al.

NATURE BIOMEDICAL ENGINEERING (2018)

Article Biotechnology & Applied Microbiology

An APOBEC3A-Cas9 base editor with minimized bystander and off-target activities

Jason M. Gehrke et al.

NATURE BIOTECHNOLOGY (2018)

Review Multidisciplinary Sciences

Emerging applications for DNA writers and molecular recorders

Fahim Farzadfard et al.

SCIENCE (2018)

Article Multidisciplinary Sciences

Developmental barcoding of whole mouse via homing CRISPR

Reza Kalhor et al.

SCIENCE (2018)

Article Multidisciplinary Sciences

Single-cell mapping of lineage and identity in direct reprogramming

Brent A. Biddy et al.

NATURE (2018)

Review Biochemical Research Methods

Cellular barcoding: lineage tracing, screening and beyond

Justus M. Kebschull et al.

NATURE METHODS (2018)

Article Biochemical Research Methods

Rapidly evolving homing CRISPR barcodes

Reza Kalhor et al.

NATURE METHODS (2017)

Article Multidisciplinary Sciences

Synthetic recording and in situ readout of lineage information in single cells

Kirsten L. Frieda et al.

NATURE (2017)

Article Multidisciplinary Sciences

Polylox barcoding reveals haematopoietic stem cell fates realized in vivo

Weike Pei et al.

NATURE (2017)

Article Multidisciplinary Sciences

Programmable base editing of A.T to G.C in genomic DNA without DNA cleavage

Nicole M. Gaudelli et al.

NATURE (2017)

Article Biochemical Research Methods

High-throughput, image-based screening of pooled genetic-variant libraries

George Emanuel et al.

NATURE METHODS (2017)

Article Multidisciplinary Sciences

Massively parallel digital transcriptional profiling of single cells

Grace X. Y. Zheng et al.

NATURE COMMUNICATIONS (2017)

Article Developmental Biology

Mapping a multiplexed zoo of mRNA expression

Harry M. T. Choi et al.

DEVELOPMENT (2016)

Article Multidisciplinary Sciences

Programmable editing of a target base in genomic DNA without double-stranded DNA cleavage

Alexis C. Komor et al.

NATURE (2016)

Article Biotechnology & Applied Microbiology

Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9

John G. Doench et al.

NATURE BIOTECHNOLOGY (2016)

Article Multidisciplinary Sciences

Whole-organism lineage tracing by combinatorial and cumulative genome editing

Aaron McKenna et al.

SCIENCE (2016)

Article Biochemistry & Molecular Biology

Microscopy-Based High-Content Screening

Michael Boutros et al.

Article Biotechnology & Applied Microbiology

Spatial reconstruction of single-cell gene expression data

Rahul Satija et al.

NATURE BIOTECHNOLOGY (2015)

Article Biochemistry & Molecular Biology

Studying clonal dynamics in response to cancer therapy using high-complexity barcoding

Hyo-eun C. Bhang et al.

NATURE MEDICINE (2015)

Article Biochemical Research Methods

Continuously tunable nucleic acid hybridization probes

Lucia R. Wu et al.

NATURE METHODS (2015)

Article Multidisciplinary Sciences

Spatially resolved, highly multiplexed RNA profiling in single cells

Kok Hao Chen et al.

SCIENCE (2015)

Article Biochemical Research Methods

A Barcoding Strategy Enabling Higher-Throughput Library Screening by Microscopy

Robert Chen et al.

ACS SYNTHETIC BIOLOGY (2015)

Article Chemistry, Multidisciplinary

Exquisite Sequence Selectivity with Small Conditional RNAs

Jonathan B. Sternberg et al.

NANO LETTERS (2014)

Article Multidisciplinary Sciences

Highly Multiplexed Subcellular RNA Sequencing in Situ

Je Hyuk Lee et al.

SCIENCE (2014)

Article Chemistry, Multidisciplinary

Selective Nucleic Acid Capture with Shielded Covalent Probes

Jeffrey R. Vieregg et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2013)

Article Multidisciplinary Sciences

Diverse and heritable lineage imprinting of early haematopoietic progenitors

Shalin H. Naik et al.

NATURE (2013)

Article Biochemical Research Methods

In situ sequencing for RNA analysis in preserved tissue and cells

Rongqin Ke et al.

NATURE METHODS (2013)

Article Biochemical Research Methods

Visualizing SNSNVs to quantify allele-specific expression in single cells

Marshall J. Levesque et al.

NATURE METHODS (2013)

Article Multidisciplinary Sciences

Multiplex Genome Engineering Using CRISPR/Cas Systems

Le Cong et al.

SCIENCE (2013)

Article Biochemical Research Methods

Fiji: an open-source platform for biological-image analysis

Johannes Schindelin et al.

NATURE METHODS (2012)

Article Biotechnology & Applied Microbiology

Programmable in situ amplification for multiplexed imaging of mRNA expression

Harry M. T. Choi et al.

NATURE BIOTECHNOLOGY (2010)

Article Biochemical Research Methods

Imaging individual mRNA molecules using multiple singly labeled probes

Arjun Raj et al.

NATURE METHODS (2008)

Article Biochemical Research Methods

Fluorescent in situ sequencing on polymerase colonies

RD Mitra et al.

ANALYTICAL BIOCHEMISTRY (2003)

Article Developmental Biology

Developmental expression of the T-box transcription factor T-bet/Tbx21 during mouse embryogenesis

A Faedo et al.

MECHANISMS OF DEVELOPMENT (2002)