4.6 Review

Biodiversity analyses in freshwater meiofauna through DNA sequence data

Related references

Note: Only part of the references are listed.
Review Multidisciplinary Sciences

A taxonomic review and revisions of Microstomidae (Platyhelminthes: Macrostomorpha)

Sarah Atherton et al.

PLOS ONE (2019)

Article Biochemistry & Molecular Biology

Metabarcoding of freshwater invertebrates to detect the effects of a pesticide spill

Carmelo Andujar et al.

MOLECULAR ECOLOGY (2018)

Article Biodiversity Conservation

Evidence of plant and animal communities at exposed and subglacial (cave) geothermal sites in Antarctica

Ceridwen I. Fraser et al.

POLAR BIOLOGY (2018)

Article Evolutionary Biology

Mitonuclear discordance as a confounding factor in the DNA taxonomy of monogonont rotifers

Ulrike Obertegger et al.

ZOOLOGICA SCRIPTA (2018)

Article Environmental Sciences

100 years on: a re-evaluation of the first discovery of microfauna from Ross Island, Antarctica

Alejandro Velasco-Castrillon et al.

ANTARCTIC SCIENCE (2018)

Article Ecology

Addressing biodiversity shortfalls in meiofauna

Gustavo Fonseca et al.

JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY (2018)

Article Biochemistry & Molecular Biology

The hitchhiker's guide to single-locus species delimitation

Simon Dellicour et al.

MOLECULAR ECOLOGY RESOURCES (2018)

Article Biochemistry & Molecular Biology

Species and hybrids in the genus Diaphanosoma Fischer, 1850 (Crustacea: Branchiopoda: Cladocera)

Ping Liu et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2018)

Article Evolutionary Biology

Wide distributions and cryptic diversity within a Microstomum (Platyhelminthes) species complex

Sarah Atherton et al.

ZOOLOGICA SCRIPTA (2018)

Article Evolutionary Biology

Metabarcoding using multiplexed markers increases species detection in complex zooplankton communities

Guang K. Zhang et al.

EVOLUTIONARY APPLICATIONS (2018)

Article Biochemistry & Molecular Biology

Why the COI barcode should be the community DNA metabarcode for the metazoa

Carmelo Andujar et al.

MOLECULAR ECOLOGY (2018)

Article Multidisciplinary Sciences

Multi-marker metabarcoding approach to study mesozooplankton at basin scale

Sergio Stefanni et al.

SCIENTIFIC REPORTS (2018)

Article Marine & Freshwater Biology

High diversity in Keratella cochlearis (Rotifera, Monogononta): morphological and genetic evidence

Adam Cieplinski et al.

HYDROBIOLOGIA (2017)

Article Paleontology

Cyprideis (Crustacea, Ostracoda) in Australia

Isa Schon et al.

JOURNAL OF MICROPALAEONTOLOGY (2017)

Article Zoology

Population structure and cryptic species in the cosmopolitan rotifer Euchlanis dilatata

Azar Kordbacheh et al.

ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY (2017)

Article Ecology

Barcoding rotifer biodiversity in Mediterranean ponds using diapausing egg banks

Emilio Moreno et al.

ECOLOGY AND EVOLUTION (2017)

Article Multidisciplinary Sciences

Zooplankton Community Profiling in a Eutrophic Freshwater Ecosystem-Lake Tai Basin by DNA Metabarcoding

Jianghua Yang et al.

SCIENTIFIC REPORTS (2017)

Article Ecology

Genetic diversity of widespread moss-dwelling nematode species in German beech forests

Janina Schenk et al.

EUROPEAN JOURNAL OF SOIL BIOLOGY (2016)

Article Marine & Freshwater Biology

Coexistence of cryptic Brachionus calyciflorus (Rotifera) species: roles of environmental variables

Xinli Wen et al.

JOURNAL OF PLANKTON RESEARCH (2016)

Article Marine & Freshwater Biology

Is metabarcoding suitable for estuarine plankton monitoring? A comparative study with microscopy

David Abad et al.

MARINE BIOLOGY (2016)

Article Biochemical Research Methods

DADA2: High-resolution sample inference from Illumina amplicon data

Benjamin J. Callahan et al.

NATURE METHODS (2016)

Article Biochemistry & Molecular Biology

GenBank

Dennis A. Benson et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Biology

Imagining Sisyphus happy: DNA barcoding and the unnamed majority

Mark Blaxter

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2016)

Article Multidisciplinary Sciences

Environmental DNA reveals that rivers are conveyer belts of biodiversity information

Kristy Deiner et al.

NATURE COMMUNICATIONS (2016)

Review Ecology

The ecologist's field guide to sequence-based identification of biodiversity

Simon Creer et al.

METHODS IN ECOLOGY AND EVOLUTION (2016)

Review Ecology

Seven Shortfalls that Beset Large-Scale Knowledge of Biodiversity

Joaquin Hortal et al.

ANNUAL REVIEW OF ECOLOGY, EVOLUTION, AND SYSTEMATICS, VOL 46 (2015)

Article Environmental Sciences

Metabarcoding of benthic eukaryote communities predicts the ecological condition of estuaries

Anthony A. Chariton et al.

ENVIRONMENTAL POLLUTION (2015)

Article Evolutionary Biology

Mitochondrial DNA analyses reveal widespread tardigrade diversity in Antarctica

Alejandro Velasco-Castrillon et al.

INVERTEBRATE SYSTEMATICS (2015)

Review Genetics & Heredity

Metagenetic tools for the census of marine meiofaunal biodiversity: An overview

Laura Carugati et al.

MARINE GENOMICS (2015)

Article Biodiversity Conservation

Guidelines for DNA taxonomy, with a focus on the meiofauna

Diego Fontaneto et al.

MARINE BIODIVERSITY (2015)

Article Marine & Freshwater Biology

Non-destructive DNA extraction for small pelagic copepods to perform integrative taxonomy

Astrid Cornils

JOURNAL OF PLANKTON RESEARCH (2015)

Article Multidisciplinary Sciences

Large-Scale Biomonitoring of Remote and Threatened Ecosystems via High-Throughput Sequencing

Joel F. Gibson et al.

PLoS One (2015)

Article Environmental Sciences

A MOLECULAR-BASED APPROACH FOR EXAMINING RESPONSES OF EUKARYOTES IN MICROCOSMS TO CONTAMINANT-SPIKED ESTUARINE SEDIMENTS

Anthony A. Chariton et al.

ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY (2014)

Article Ecology

Fine-scale genetics of subterranean syncarids

Maria G. Asmyhr et al.

FRESHWATER BIOLOGY (2014)

Article Biochemistry & Molecular Biology

Unguided Species Delimitation Using DNA Sequence Data from Multiple Loci

Ziheng Yang et al.

MOLECULAR BIOLOGY AND EVOLUTION (2014)

Article Multidisciplinary Sciences

Fifty thousand years of Arctic vegetation and megafaunal diet

Eske Willerslev et al.

NATURE (2014)

Article Biodiversity Conservation

Mopsechiniscus franciscae, a new species of a rare genus of Tardigrada from continental Antarctica

Roberto Guidetti et al.

POLAR BIOLOGY (2014)

Article Zoology

Diversity of the rotifer Brachionus plicatilis species complex (Rotifera: Monogononta) in Iran through integrative taxonomy

Reza Malekzadeh-Viayeh et al.

ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY (2014)

Article Biochemical Research Methods

A general species delimitation method with applications to phylogenetic placements

Jiajie Zhang et al.

BIOINFORMATICS (2013)

Article Ecology

High sensitivity of 454 pyrosequencing for detection of rare species in aquatic communities

Aibin Zhan et al.

METHODS IN ECOLOGY AND EVOLUTION (2013)

Review Biochemistry & Molecular Biology

Who is eating what: diet assessment using next generation sequencing

Francois Pompanon et al.

MOLECULAR ECOLOGY (2012)

Article Biochemistry & Molecular Biology

ABGD, Automatic Barcode Gap Discovery for primary species delimitation

N. Puillandre et al.

MOLECULAR ECOLOGY (2012)

Article Biochemistry & Molecular Biology

Biomonitoring 2.0: a new paradigm in ecosystem assessment made possible by next-generation DNA sequencing

Donald J. Baird et al.

MOLECULAR ECOLOGY (2012)

Editorial Material Biochemistry & Molecular Biology

Environmental DNA

Pierre Taberlet et al.

MOLECULAR ECOLOGY (2012)

Article Biochemistry & Molecular Biology

Large-scale species delimitation method for hyperdiverse groups

N. Puillandre et al.

MOLECULAR ECOLOGY (2012)

Article Multidisciplinary Sciences

PCR Primers for Metazoan Nuclear 18S and 28S Ribosomal DNA Sequences

Ryuji J. Machida et al.

PLOS ONE (2012)

Article Multidisciplinary Sciences

The widely used small subunit 18S rDNA molecule greatly underestimates true diversity in biodiversity surveys of the meiofauna

Cuong Q. Tang et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Review Ecology

Sequencing our way towards understanding global eukaryotic biodiversity

Holly M. Bik et al.

TRENDS IN ECOLOGY & EVOLUTION (2012)

Review Entomology

Integrative Taxonomy: A Multisource Approach to Exploring Biodiversity

Birgit C. Schlick-Steiner et al.

ANNUAL REVIEW OF ENTOMOLOGY (2010)

Article Ecology

Ecological assessment of estuarine sediments by pyrosequencing eukaryotic ribosomal DNA

Anthony A. Chariton et al.

FRONTIERS IN ECOLOGY AND THE ENVIRONMENT (2010)

Article Biochemistry & Molecular Biology

Ultrasequencing of the meiofaunal biosphere: practice, pitfalls and promises

S. Creer et al.

MOLECULAR ECOLOGY (2010)

Article Biochemistry & Molecular Biology

Reproducibility of read numbers in high-throughput sequencing analysis of nematode community composition and structure

Dorota L. Porazinska et al.

MOLECULAR ECOLOGY RESOURCES (2010)

Article Biochemistry & Molecular Biology

Evaluating high-throughput sequencing as a method for metagenomic analysis of nematode diversity

Dorota L. Porazinska et al.

MOLECULAR ECOLOGY RESOURCES (2009)

Article Evolutionary Biology

Cryptic animal species are homogeneously distributed among taxa and biogeographical regions

Markus Pfenninger et al.

BMC EVOLUTIONARY BIOLOGY (2007)

Article Biochemistry & Molecular Biology

BOLD: The Barcode of Life Data System (www.barcodinglife.org)

Sujeevan Ratnasingham et al.

MOLECULAR ECOLOGY NOTES (2007)

Article Evolutionary Biology

Recent advances in DNA taxonomy

A. P. Vogler et al.

JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH (2007)

Review Ecology

Cryptic species as a window on diversity and conservation

David Bickford et al.

TRENDS IN ECOLOGY & EVOLUTION (2007)

Article Biology

Biological identifications through DNA barcodes

PDN Hebert et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2003)