4.7 Article Proceedings Paper

Prediction of ribosome footprint profile shapes from transcript sequences

Related references

Note: Only part of the references are listed.
Article Statistics & Probability

WAVELET-BASED GENETIC ASSOCIATION ANALYSIS OF FUNCTIONAL PHENOTYPES ARISING FROM HIGH-THROUGHPUT SEQUENCING ASSAYS

Heejung Shim et al.

ANNALS OF APPLIED STATISTICS (2015)

Article Biochemistry & Molecular Biology

Ribosome profiling reveals post-transcriptional buffering of divergent gene expression in yeast

C. Joel McManus et al.

GENOME RESEARCH (2014)

Article Biochemistry & Molecular Biology

Accounting for biases in riboprofiling data indicates a major role for proline in stalling translation

Carlo G. Artieri et al.

GENOME RESEARCH (2014)

Article Biochemistry & Molecular Biology

Causal signals between codon bias, mRNA structure, and the efficiency of translation and elongation

Cristina Pop et al.

MOLECULAR SYSTEMS BIOLOGY (2014)

Article Genetics & Heredity

Genetic Influences on Translation in Yeast

Frank W. Albert et al.

PLOS GENETICS (2014)

Article Biochemistry & Molecular Biology

Rate-Limiting Steps in Yeast Protein Translation

Premal Shah et al.

Article Biochemistry & Molecular Biology

Positively Charged Residues Are the Major Determinants of Ribosomal Velocity

Catherine A. Charneski et al.

PLOS BIOLOGY (2013)

Article Biochemistry & Molecular Biology

Strong association between mRNA folding strength and protein abundance in S. cerevisiae

Hadas Zur et al.

EMBO REPORTS (2012)

Article Evolutionary Biology

Reduced mRNA Secondary-Structure Stability Near the Start Codon Indicates Functional Genes in Prokaryotes

Thomas E. Keller et al.

GENOME BIOLOGY AND EVOLUTION (2012)

Article Genetics & Heredity

Balanced Codon Usage Optimizes Eukaryotic Translational Efficiency

Wenfeng Qian et al.

PLOS GENETICS (2012)

Article Biochemistry & Molecular Biology

Wobble base-pairing slows in vivo translation elongation in metazoans

Michael Stadler et al.

Article Biotechnology & Applied Microbiology

Composite effects of gene determinants on the translation speed and density of ribosomes

Tamir Tuller et al.

GENOME BIOLOGY (2011)

Article Biochemistry & Molecular Biology

An Evolutionarily Conserved Mechanism for Controlling the Efficiency of Protein Translation

Tamir Tuller et al.

Article Multidisciplinary Sciences

Genome-wide measurement of RNA secondary structure in yeast

Michael Kertesz et al.

NATURE (2010)

Article Multidisciplinary Sciences

Translation efficiency is determined by both codon bias and folding energy

Tamir Tuller et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Biochemical Research Methods

A Universal Trend of Reduced mRNA Stability near the Translation-Initiation Site in Prokaryotes and Eukaryotes

Wanjun Gu et al.

PLOS COMPUTATIONAL BIOLOGY (2010)

Article Multidisciplinary Sciences

Coding-Sequence Determinants of Gene Expression in Escherichia coli

Grzegorz Kudla et al.

SCIENCE (2009)

Article Multidisciplinary Sciences

Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling

Nicholas T. Ingolia et al.

SCIENCE (2009)

Article Multidisciplinary Sciences

Alternative isoform regulation in human tissue transcriptomes

Eric T. Wang et al.

NATURE (2008)

Article Biochemical Research Methods

Codon optimization can improve expression of human genes in Escherichia coli:: A multi-gene study

Nicola A. Burgess-Brown et al.

PROTEIN EXPRESSION AND PURIFICATION (2008)

Review Multidisciplinary Sciences

Foundations for engineering biology

D Endy

NATURE (2005)

Review Multidisciplinary Sciences

Initial sequencing and analysis of the human genome

ES Lander et al.

NATURE (2001)

Article Computer Science, Artificial Intelligence

Adaptive wavelet thresholding for image denoising and compression

SG Chang et al.

IEEE TRANSACTIONS ON IMAGE PROCESSING (2000)