Related references
Note: Only part of the references are listed.A novel statistical method for quantitative comparison of multiple ChIP-seq datasets
Li Chen et al.
BIOINFORMATICS (2015)
MethylSig: a whole genome DNA methylation analysis pipeline
Yongseok Park et al.
BIOINFORMATICS (2014)
DMAP: differential methylation analysis package for RRBS and WGBS data
Peter A. Stockwell et al.
BIOINFORMATICS (2014)
Using beta-binomial regression for high-precision differential methylation analysis in multifactor whole-genome bisulfite sequencing experiments
Egor Dolzhenko et al.
BMC BIOINFORMATICS (2014)
Active and Passive Demethylation of Male and Female Pronuclear DNA in the Mammalian Zygote
Fan Guo et al.
CELL STEM CELL (2014)
DNA Methyltransferase Inhibition Reverses Epigenetically Embedded Phenotypes in Lung Cancer Preferentially Affecting Polycomb Target Genes
Antje Hascher et al.
CLINICAL CANCER RESEARCH (2014)
A Bayesian hierarchical model to detect differentially methylated loci from single nucleotide resolution sequencing data
Hao Feng et al.
NUCLEIC ACIDS RESEARCH (2014)
Bisulfighter: accurate detection of methylated cytosines and differentially methylated regions
Yutaka Saito et al.
NUCLEIC ACIDS RESEARCH (2014)
MOABS: model based analysis of bisulfite sequencing data
Deqiang Sun et al.
GENOME BIOLOGY (2014)
voom: precision weights unlock linear model analysis tools for RNA-seq read counts
Charity W. Law et al.
GENOME BIOLOGY (2014)
Statistical methods for detecting differentially methylated loci and regions
Mark D. Robinson et al.
FRONTIERS IN GENETICS (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
Detection of significantly differentially methylated regions in targeted bisulfite sequencing data
Katja Hebestreit et al.
BIOINFORMATICS (2013)
A new shrinkage estimator for dispersion improves differential expression detection in RNA-seq data
Hao Wu et al.
BIOSTATISTICS (2013)
Genome-wide Profiling of 5-Formylcytosine Reveals Its Roles in Epigenetic Priming
Chun-Xiao Song et al.
CELL (2013)
TherMos: Estimating protein-DNA binding energies from in vivo binding profiles
Wenjie Sun et al.
NUCLEIC ACIDS RESEARCH (2013)
The Dynamics of Genome-wide DNA Methylation Reprogramming in Mouse Primordial Germ Cells
Stefanie Seisenberger et al.
MOLECULAR CELL (2012)
KLC1-ALK: A Novel Fusion in Lung Cancer Identified Using a Formalin-Fixed Paraffin-Embedded Tissue Only
Yuki Togashi et al.
PLOS ONE (2012)
Base-Pair Resolution DNA Methylation Sequencing Reveals Profoundly Divergent Epigenetic Landscapes in Acute Myeloid Leukemia
Altuna Akalin et al.
PLOS GENETICS (2012)
BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions
Kasper D. Hansen et al.
GENOME BIOLOGY (2012)
methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles
Altuna Akalin et al.
GENOME BIOLOGY (2012)
Smurf1 ubiquitin ligase targets Kruppel-like factor KLF2 for ubiquitination and degradation in human lung cancer H1299 cells
Ping Xie et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2011)
5-hmC-mediated epigenetic dynamics during postnatal neurodevelopment and aging
Keith E. Szulwach et al.
NATURE NEUROSCIENCE (2011)
Integrating 5-Hydroxymethylcytosine into the Epigenomic Landscape of Human Embryonic Stem Cells
Keith E. Szulwach et al.
PLOS GENETICS (2011)
Age-dependent DNA methylation of genes that are suppressed in stem cells is a hallmark of cancer
Andrew E. Teschendorff et al.
GENOME RESEARCH (2010)
DNA hypermethylation of tumors from non-small cell lung cancer (NSCLC) patients is associated with gender and histologic type
Stephen E. Hawes et al.
LUNG CANCER (2010)
Human DNA methylomes at base resolution show widespread epigenomic differences
Ryan Lister et al.
NATURE (2009)
Prognostic gene signatures for non-small-cell lung cancer
Paul C. Boutros et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
The Nuclear DNA Base 5-Hydroxymethylcytosine Is Present in Purkinje Neurons and the Brain
Skirmantas Kriaucionis et al.
SCIENCE (2009)
Variance stabilizing transformations of Poisson, binomial and negative binomial distributions
Yu Guan
STATISTICS & PROBABILITY LETTERS (2009)
Genome-scale DNA methylation maps of pluripotent and differentiated cells
Alexander Meissner et al.
NATURE (2008)
Reduced-representation methylation mapping
Jeffrey A. Jeddeloh et al.
GENOME BIOLOGY (2008)
Moderated statistical tests for assessing differences in tag abundance
Mark D. Robinson et al.
BIOINFORMATICS (2007)
Genome-wide single nucleotide polymorphism analysis of lung cancer risk detects the KLF6 gene
Monica Spinola et al.
CANCER LETTERS (2007)
Stability and flexibility of epigenetic gene regulation in mammalian development
Wolf Reik
NATURE (2007)
Microarray-based DNA methylation profiling: technology and applications
A Schumacher et al.
NUCLEIC ACIDS RESEARCH (2006)
Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells
M Weber et al.
NATURE GENETICS (2005)
Reduced representation bisulfite sequencing for comparative high-resolution DNA methylation analysis
A Meissner et al.
NUCLEIC ACIDS RESEARCH (2005)
DNA methylation patterns and epigenetic memory
A Bird
GENES & DEVELOPMENT (2002)