4.3 Article

Simplicispira hankyongi sp. nov., a novel denitrifying bacterium isolated from sludge

Publisher

SPRINGER
DOI: 10.1007/s10482-019-01341-0

Keywords

Simplicispira hankyongi; 16S rRNA gene sequence; Draft genome sequencing; Polyphasic taxonomy

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Funding

  1. National Institute of Biological Resources (NIBR)
  2. Cooperative Research Program for Agriculture Science & Technology Development Rural Development Administration, Republic of Korea [PJ012283]
  3. Korea Research Institute of Bioscience & Biotechnology (KRIBB) Research Initiative Program

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A Gram-stain-negative, facultatively anaerobic, motile, light-yellow, and rod-shaped bacterium, designated as NY-02(T), was isolated from the sludge of a wastewater treatment plant in Hanam City, Republic of Korea. The comparison of 16S rRNA gene sequences revealed that the strain formed a distinct lineage within the genus Simplicispira and was most closely related to S. suum SC1-8(T) (99.0%), S. limi EMB325(T) (98.3%), S. psychrophila LMG 5408(T) (98.2%), and S. piscis RSG39(T) (97.4%). Both average nucleotide identity (ANI) and DNA-DNA hybridization (DDH) values between strain NY-02(T), and its closes type strains [S. suum SC1-8(T), S. limi EMB325(T), S. psychrophila LMG 5408(T), and S. piscis RSG39(T)] were lower than the cut-off (>= 95-96% for ANI and >= 70% for DDH) to define a bacterial species. The genome comprises of 3,709,074 bp with a G + C content of 64.2 mol%. Ubiquinone 8 (Q-8) was the predominant quinone. The major fatty acids were C-16:0 and summed feature 3 (C-16:1 omega 7c and/or C-16:1 omega 6c), and the major polar lipids were phosphatidylglycerol, diphosphatidylglycerol, and phosphatidylethanolamine. The results of the physiological, biochemical, and taxonomic analyses in addition to low ANI and DNA-DNA relatedness values (82.2% and < 34.0%, respectively) indicate that the strain NY-02(T) represents a novel species of the genus Simplicispira. The name proposed for strain NY-02(T) (= KACC 19731(T) = LMG 31165(T)) is Simplicispira hankyongi sp. nov.

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