4.7 Article

GWAS Identifies 44 Independent Associated Genomic Loci for Self-Reported Adult Hearing Difficulty in UK Biobank

Journal

AMERICAN JOURNAL OF HUMAN GENETICS
Volume 105, Issue 4, Pages 788-802

Publisher

CELL PRESS
DOI: 10.1016/j.ajhg.2019.09.008

Keywords

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Funding

  1. Action on Hearing Loss [11516]
  2. NIHR UCLH BRC Deafness and Hearing Problems Theme
  3. NIHR Manchester Biomedical Research Centre
  4. Economic and Social Research Council
  5. National Institute on Aging
  6. Wellcome
  7. MRC [MR/N01104X/1 2018-2020, ES/S008349/1]
  8. Wellcome Trust
  9. Medical Research Council
  10. European Union
  11. National Institute for Health Research (NIHR)
  12. Clinical Research Facility, and Biomedical Research Centre based at Guy's and St Thomas' NHS Foundation Trust
  13. King's College London
  14. ESRC
  15. ESRC [ES/S008349/1] Funding Source: UKRI
  16. MRC [MR/N01104X/1, G1001799, MR/N01104X/2] Funding Source: UKRI

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Age-related hearing impairment (ARHI) is the most common sensory impairment in the aging population; a third of individuals are affected by disabling hearing loss by the age of 65. It causes social isolation and depression and has recently been identified as a risk factor for dementia. The genetic risk factors and underlying pathology of ARHI are largely unknown, meaning that targets for new therapies remain elusive, yet heritability estimates range between 35% and 55%. We performed genome-wide association studies (GWASs) for two self-reported hearing phenotypes, using more than 250,000 UK Biobank (UKBB) volunteers aged between 40 and 69 years. Forty-four independent genome-wide significant loci (p < 5E-08) were identified, considerably increasing the number of established trait loci. Thirty-four loci are novel associations with hearing loss of any form, and only one of the ten known hearing loci has a previously reported association with an ARHI-related trait. Gene sets from these loci are enriched in auditory processes such as synaptic activities, nervous system processes, inner ear morphology, and cognition, while genetic correlation analysis revealed strong positive correlations with multiple personality and psychological traits for the first time. Immunohistochemistry for protein localization in adult mouse cochlea implicate metabolic, sensory, and neuronal functions for NID2, CLRN2, and ARHGEF28. These results provide insight into the genetic landscape underlying ARHI, opening up novel therapeutic targets for further investigation. In a wider context, our study also highlights the viability of using self-report phenotypes for genetic discovery in very large samples when deep phenotyping is unavailable.

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