Related references
Note: Only part of the references are listed.Genome-Based Approach Delivers Vaccine Candidates Against Pseudomonas aeruginosa
Irene Bianconi et al.
FRONTIERS IN IMMUNOLOGY (2019)
A novel approach of virulome based reverse vaccinology for exploring and validating peptide-based vaccine candidates against the most troublesome nosocomial pathogen: Acinetobacter baumannii
Sajjad Ahmad et al.
JOURNAL OF MOLECULAR GRAPHICS & MODELLING (2018)
Proteomics, Bioinformatics and Structure-Function Antigen Mining For Gonorrhea Vaccines
Benjamin I. Baarda et al.
FRONTIERS IN IMMUNOLOGY (2018)
Prediction of vaccine candidates against Pseudomonas aeruginosa: An integrated genomics and proteomics approach
Muhammad Ibrahim Rashid et al.
GENOMICS (2017)
An In Silico Identification of Common Putative Vaccine Candidates against Treponema pallidum: A Reverse Vaccinology and Subtractive Genomics Based Approach
Arun Kumar Jaiswal et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2017)
Designing an efficient multi-epitope oral vaccine against Helicobacter pylori using immunoinformatics and structural vaccinology approaches
Navid Nezafat et al.
MOLECULAR BIOSYSTEMS (2017)
Differential Th17 response induced by the two clades of the pandemic ST258 Klebsiella pneumoniae clonal lineages producing KPC-type carbapenemase
Ann Maria Clemente et al.
PLOS ONE (2017)
The immune Epitope Database and Analysis Resource in Epitope Discovery and Synthetic Vaccine Design
Ward Fleri et al.
FRONTIERS IN IMMUNOLOGY (2017)
Towards a peptide-based vaccine against Shigella sonnei: A subtractive reverse vaccinology based approach
Shehneela Baseer et al.
BIOLOGICALS (2017)
In silico identification of vaccine candidates against Klebsiella oxytoca
Sandipan Talukdar et al.
COMPUTATIONAL BIOLOGY AND CHEMISTRY (2017)
VacSol: a high throughput in silico pipeline to predict potential therapeutic targets in prokaryotic pathogens using subtractive reverse vaccinology
Muhammad Rizwan et al.
BMC BIOINFORMATICS (2017)
Pangenome and immuno-proteomics analysis of Acinetobacter baumannii strains revealed the core peptide vaccine targets
Afreenish Hassan et al.
BMC GENOMICS (2016)
Identification of putative drug targets in Vancomycin-resistant Staphylococcus aureus (VRSA) using computer aided protein data analysis
Md Anayet Hasan et al.
GENE (2016)
The HADDOCK2.2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes
G. C. P. van Zundert et al.
JOURNAL OF MOLECULAR BIOLOGY (2016)
BPGA- an ultra-fast pan-genome analysis pipeline
Narendrakumar M. Chaudhari et al.
SCIENTIFIC REPORTS (2016)
Uncovering major genomic features of essential genes in Bacteria and a methanogenic Archaea
Ana Laura Grazziotin et al.
FEBS JOURNAL (2015)
Identification of putative vaccine candidates against Helicobacter pylori exploiting exoproteome and secretome: A reverse vaccinology based approach
Anam Naz et al.
INFECTION GENETICS AND EVOLUTION (2015)
Silver resistance in Gram-negative bacteria: a dissection of endogenous and exogenous mechanisms
Christopher P. Randall et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2015)
Infections caused by KPC-producing Klebsiella pneumoniae: differences in therapy and mortality in a multicentre study
Mario Tumbarello et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2015)
Emergence of Carbapenemase Producing Klebsiella Pneumonia and Spread of KPC-2 and KPC-17 in Taiwan: A Nationwide Study from 2011 to 2013
I-Ling Tseng et al.
PLOS ONE (2015)
Cholera Toxin Subunit B as Adjuvant-An Accelerator in Protective Immunity and a Break in Autoimmunity
Thomas Stratmann
VACCINES (2015)
A multi-epitope vaccine based on Chlamydia trachomatis major outer membrane protein induces specific immunity in mice
Jianxin Tu et al.
ACTA BIOCHIMICA ET BIOPHYSICA SINICA (2014)
AllergenFP: allergenicity prediction by descriptor fingerprints
Ivan Dimitrov et al.
BIOINFORMATICS (2014)
AllerTOP v.2-a server for in silico prediction of allergens
Ivan Dimitrov et al.
JOURNAL OF MOLECULAR MODELING (2014)
DEG 10, an update of the database of essential genes that includes both protein-coding genes and noncoding genomic elements
Hao Luo et al.
NUCLEIC ACIDS RESEARCH (2014)
Designing of interferon-gamma inducing MHC class-II binders
Sandeep Kumar Dhanda et al.
BIOLOGY DIRECT (2013)
Klebsiella pneumoniae Peptidoglycan-Associated Lipoprotein and Murein Lipoprotein Contribute to Serum Resistance, Antiphagocytosis, and Proinflammatory Cytokine Stimulation
Pei-Fang Hsieh et al.
JOURNAL OF INFECTIOUS DISEASES (2013)
GalaxyRefine: protein structure refinement driven by side-chain repacking
Lim Heo et al.
NUCLEIC ACIDS RESEARCH (2013)
Activation of IFN-γ/STAT/IRF-1 in Hepatic Responses to Klebsiella pneumoniae Infection
Yi-Chun Lin et al.
PLOS ONE (2013)
Identification and characterization of antigens as vaccine candidates against Klebsiella pneumoniae
Urban Lundberg et al.
HUMAN VACCINES & IMMUNOTHERAPEUTICS (2013)
Properties of MHC Class I Presented Peptides That Enhance Immunogenicity
Jorg J. A. Calis et al.
PLOS COMPUTATIONAL BIOLOGY (2013)
Predictors of Mortality in Bloodstream Infections Caused by Klebsiella pneumoniae Carbapenemase-Producing K. pneumoniae: Importance of Combination Therapy
Mario Tumbarello et al.
CLINICAL INFECTIOUS DISEASES (2012)
PROSO II - a new method for protein solubility prediction
Pawel Smialowski et al.
FEBS JOURNAL (2012)
Development of immunization trials against Klebsiella pneumoniae
Tarek A. Ahmad et al.
VACCINE (2012)
Protective Efficacy of DNA Vaccines Encoding Outer Membrane Protein A and OmpK36 of Klebsiella pneumoniae in Mice
Prathiba Kurupati et al.
CLINICAL AND VACCINE IMMUNOLOGY (2011)
Carbapenemase-producing Klebsiella pneumoniae: (when) might we still consider treating with carbapenems?
G. L. Daikos et al.
CLINICAL MICROBIOLOGY AND INFECTION (2011)
CPORT: A Consensus Interface Predictor and Its Performance in Prediction-Driven Docking with HADDOCK
Sjoerd J. de Vries et al.
PLOS ONE (2011)
Contributions of humoral and cellular immunity to vaccine-induced protection in humans
Ian J. Amanna et al.
VIROLOGY (2011)
High-throughput prediction of protein antigenicity using protein microarray data
Christophe N. Magnan et al.
BIOINFORMATICS (2010)
Search and clustering orders of magnitude faster than BLAST
Robert C. Edgar
BIOINFORMATICS (2010)
Reverse Vaccinology: Developing Vaccines in the Era of Genomics
Alessandro Sette et al.
IMMUNITY (2010)
Detection and treatment options for Klebsiella pneumoniae carbapenemases (KPCs): an emerging cause of multidrug-resistant infection
Elizabeth B. Hirsch et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2010)
Klebsiella pneumoniae Increases the Levels of Toll-Like Receptors 2 and 4 in Human Airway Epithelial Cells
Veronica Regueiro et al.
INFECTION AND IMMUNITY (2009)
VirulentPred: a SVM based prediction method for virulent proteins in bacterial pathogens
Aarti Garg et al.
BMC BIOINFORMATICS (2008)
ProSA-web: interactive web service for the recognition of errors in three-dimensional structures of proteins
Markus Wiederstein et al.
NUCLEIC ACIDS RESEARCH (2007)
VaxiJen: a server for prediction of protective antigens, tumour antigens and subunit vaccines
Irini A. Doytchinova et al.
BMC BIOINFORMATICS (2007)
MvirDB - a microbial database of protein toxins, virulence factors and antibiotic resistance genes for bio-defence applications
C. E. Zhou et al.
NUCLEIC ACIDS RESEARCH (2007)
A linear peptide containing minimal T- and B-cell epitopes of Plasmodium falciparum circumsporozoite protein elicits protection against transgenic sporozoite challenge
J. Mauricio Calvo-Calle et al.
INFECTION AND IMMUNITY (2006)
Prediction of continuous B-cell epitopes in an antigen using recurrent neural network
Sudipto Saha et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2006)
Identification of vaccine candidate antigens of an ESBL producing Klebsiella pneumoniae clinical strain by immunoproteome analysis
P Kurupati et al.
PROTEOMICS (2006)
JCat:: a novel tool to adapt codon usage of a target gene to its potential expression host
A Grote et al.
NUCLEIC ACIDS RESEARCH (2005)
SCRATCH: a protein structure and structural feature prediction server
J Cheng et al.
NUCLEIC ACIDS RESEARCH (2005)
PSORTb v.2.0: Expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis
JL Gardy et al.
BIOINFORMATICS (2005)
Lipopolysaccharide-mediated protection against Klebsiella pneumoniae-induced lobar pneumonia: Intranasal vs. intramuscular route of immunization
V Yadav et al.
FOLIA MICROBIOLOGICA (2005)
VFDB: a reference database for bacterial virulence factors
LH Chen et al.
NUCLEIC ACIDS RESEARCH (2005)
UCSF chimera - A visualization system for exploratory research and analysis
EF Pettersen et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2004)
Epitope-based vaccines: an update on epitope identification, vaccine design and delivery
A Sette et al.
CURRENT OPINION IN IMMUNOLOGY (2003)
MHCPred: a server for quantitative prediction of peptide-MHC binding
PP Guan et al.
NUCLEIC ACIDS RESEARCH (2003)
ProPred1: prediction of promiscuous MHC Class-I binding sites
H Singh et al.
BIOINFORMATICS (2003)
Structure validation by Cα geometry:: φ,ψ and Cβ deviation
SC Lovell et al.
PROTEINS-STRUCTURE FUNCTION AND GENETICS (2003)
Divergent role of gamma interferon in a murine model of pulmonary versus systemic Klebsiella pneumoniae infection
TA Moore et al.
INFECTION AND IMMUNITY (2002)
Outer membrane proteins: key players for bacterial adaptation in host niches
J Lin et al.
MICROBES AND INFECTION (2002)
ProPred: prediction of HLA-DR binding sites
H Singh et al.
BIOINFORMATICS (2001)
The HMMTOP transmembrane topology prediction server
GE Tusnády et al.
BIOINFORMATICS (2001)
Evaluation and reparametrization of the OPLS-AA force field for proteins via comparison with accurate quantum chemical calculations on peptides
GA Kaminski et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2001)
Leishmaniasis: Current status of vaccine development
E Handman
CLINICAL MICROBIOLOGY REVIEWS (2001)
Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
A Krogh et al.
JOURNAL OF MOLECULAR BIOLOGY (2001)
PDBsum: summaries and analyses of PDB structures
RA Laskowski
NUCLEIC ACIDS RESEARCH (2001)
Outer membrane protein A (OmpA), peptidoglycan-associated lipoprotein (PAL), and murein lipoprotein (MLP) are released in experimental Gram-negative sepsis
J Hellman et al.
JOURNAL OF ENDOTOXIN RESEARCH (2001)
Share Paper
