4.8 Review

Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition)

Journal

AUTOPHAGY
Volume 12, Issue 1, Pages 1-222

Publisher

TAYLOR & FRANCIS INC
DOI: 10.1080/15548627.2015.1100356

Keywords

autolysosome; autophagosome; chaperone-mediated autophagy; flux; LC3; lysosome; macroautophagy; phagophore; stress; vacuole

Categories

Funding

  1. ICREA Funding Source: Custom
  2. Div Of Molecular and Cellular Bioscience [1413525] Funding Source: National Science Foundation
  3. EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT [U54HD090255, R15HD080497] Funding Source: NIH RePORTER
  4. NATIONAL CANCER INSTITUTE [R01CA178394, R01CA184208, R01CA078810, R01CA193698, K08CA193982, R01CA187305, R01CA184137, R01CA159314, R01CA130893, T32CA009686, P01CA163200, R01CA089121, R01CA143811, K08CA164047, R01CA162405, R01CA142862, R01CA109182, P30CA016672, U54CA149147, R01CA175120, R01CA138441, R01CA140964, R01CA129536, P01CA108671, K22CA181274, P30CA010815, R15CA151112, R01CA149646] Funding Source: NIH RePORTER
  5. National Center for Complementary & Integrative Health [R01AT005076] Funding Source: NIH RePORTER
  6. NATIONAL CENTER FOR RESEARCH RESOURCES [P20RR024489] Funding Source: NIH RePORTER
  7. NATIONAL EYE INSTITUTE [R01EY026171, R01EY024581, R01EY024327, R01EY026979, R01EY022633, R01EY009083, R01EY005681, R01EY010199, R01EY025362, R01EY013434, R01EY015537, R01EY018884, R01EY023512, R01EY010577] Funding Source: NIH RePORTER
  8. NATIONAL HEART, LUNG, AND BLOOD INSTITUTE [R01HL098216, R01HL117233, R01HL085629, R01HL107594, R01HL077328, R01HL072844, R01HL079669, R56HL122580, R01HL117913, R01HL072166, R01HL130174, P01HL129941, R01HL071158, R01HL130845, R01HL114697, ZIAHL006234, ZIAHL005012, R01HL126711, R01HL059888, R01HL130230, R01HL116329, R01HL056416] Funding Source: NIH RePORTER
  9. NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES [ZIAAI001106, R37AI042999, R15AI089518, R01AI108906, R01AI091968, R01AI042999, ZIAAI001107, R21AI113526, R01AI111935, R15AI119980, R21AI115286, ZIAAI000931, R01AI104928, R01AI087669, R01AI103197, R01AI092084, ZIAAI000739] Funding Source: NIH RePORTER
  10. NATIONAL INSTITUTE OF ARTHRITIS AND MUSCULOSKELETAL AND SKIN DISEASES [R01AR050429, R01AR060837, R01AR042527, R21AR060444, R01AR062030, R01AR064420, R01AR059115] Funding Source: NIH RePORTER
  11. NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES [R00DK094980, ZIADK060103, P30DK020593, R03DK106344, R01DK044234, R56DK037034, R56DK108921, K01DK075386, R01DK061498, P30DK020541, R01DK095842, ZIADK060101, R01DK090115, R01DK097441, R03DK106304, R00DK087928, R01DK094652, K08DK089117, P01DK098108, R01DK107220, R01DK105118, R03DK089010, R01DK098331, R01DK062777, R01DK062092, R01DK073336, R03DK092434, R01DK100163, R01DK079879, P30DK020572, R21DK075494, R01DK076685, R01DK033823] Funding Source: NIH RePORTER
  12. NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES [P30ES006694, ZIAES103286, P30ES023512] Funding Source: NIH RePORTER
  13. NATIONAL INSTITUTE OF GENERAL MEDICAL SCIENCES [P20GM103652, R01GM114840, R01GM060574, R01GM116908, R01GM063075, P20GM104934, R01GM096193, K12GM068524, P20GM103492, R01GM089919, R01GM061766, P20GM103554, R01GM021841, P20GM103625, R01GM101056, R01GM097355, R15GM102846, R01GM053396] Funding Source: NIH RePORTER
  14. NATIONAL INSTITUTE OF NEUROLOGICAL DISORDERS AND STROKE [R21NS091928, R01NS069566, R01NS091218, R01NS065789, K08NS085324, R01NS088192, ZIANS003128, R01NS079697, R01NS078560, R56NS065789, R01NS073813, R01NS085070, R01NS062792, R01NS076896, R01NS078072, R01NS077239, R03NS090939, R01NS089737, K08NS083739, R01NS075685] Funding Source: NIH RePORTER
  15. NATIONAL INSTITUTE ON AGING [P30AG028740, P01AG031782, R01AG039756, R01AG032611, R37AG021904, R00AG042494, RF1AG043517, R00AG048016, R01AG043517, R01AG038664, R01AG020197, K02AG042095, R01AG031867, R01AG026389] Funding Source: NIH RePORTER
  16. NATIONAL INSTITUTE ON ALCOHOL ABUSE AND ALCOHOLISM [R01AA021751, R01AA019954, R01AA022601, K01AA019996] Funding Source: NIH RePORTER
  17. NATIONAL INSTITUTE ON DRUG ABUSE [R21DA029249] Funding Source: NIH RePORTER
  18. National Institute on Minority Health and Health Disparities [G12MD007595] Funding Source: NIH RePORTER
  19. Veterans Affairs [I01BX001969, I01RX000444, I01BX001746, I01RX001477, I01BX000976, I01BX002363] Funding Source: NIH RePORTER
  20. Grants-in-Aid for Scientific Research [15K06791, 26293070, 26290018, 25461364, 26292032, 26111501, 15H01239, 25111001, 26293179, 25850198, 26111505, 15H06095] Funding Source: KAKEN
  21. VA [5I01RX001477-04] Funding Source: Federal RePORTER
  22. BBSRC [BB/L021684/1, BB/J007803/1, BB/K017233/1, BB/M023389/1, BBS/E/F/00044500, BB/J002704/1, BB/M022617/1, BBS/E/T/000PR6193, BB/N000315/1, BBS/E/D/20241864, BBS/E/T/000PR5885, BBS/E/B/000C0413, BB/J015881/1, BB/L006324/1, BB/I013695/1] Funding Source: UKRI
  23. MRC [MC_UP_A390_1106, MR/N004434/1, MR/K019384/1, MC_UU_12022/6, MC_U105185860, MR/L010933/1, MC_U132670600, G0801936, MC_UU_12016/4, G1002186, G0601891, MR/M019217/1, G1000089, MR/J010448/1, MR/M00869X/1] Funding Source: UKRI
  24. Biotechnology and Biological Sciences Research Council [BB/K017233/1, BBS/E/D/20241864, BB/L006324/1, BB/M022617/1, BB/J015881/1, BB/J002704/1, BBS/E/T/000PR5885, BBS/E/F/00044500, BBS/E/B/000C0413, BB/J007803/1, BB/N000315/1, BB/M023389/1, BB/I013695/1, BBS/E/T/000PR6193, BB/L021684/1] Funding Source: researchfish
  25. Cancer Research UK [19276, 16466, 16337, 12825, 15890, 18974, 12918, 16464, 11975] Funding Source: researchfish
  26. Lundbeck Foundation [R209-2015-3505, R191-2015-1605, R165-2013-15982, R164-2013-15528, R223-2016-849, R100-2011-8756] Funding Source: researchfish
  27. Medical Research Council [MR/N004434/1, MC_UP_A390_1106, MC_UU_12022/6, 1367959, G1002186, MC_U132670600, G0801936, MC_U105185860, 1068278, G1000089, MR/J010448/1, MC_UU_12016/4, MR/L010933/1, G0601891, MR/M00869X/1, MR/M019217/1, G0300648] Funding Source: researchfish
  28. National Institute for Health Research [NF-SI-0611-10163] Funding Source: researchfish
  29. Novo Nordisk Fonden [NNF13OC0007559] Funding Source: researchfish
  30. Parkinson&quot
  31. s UK [K-1202, F-1002, H-1201, G-1406] Funding Source: researchfish
  32. The Danish Cancer Society [R90-A6002, R124-A7493, R146-A9471, R72-A4408] Funding Source: researchfish
  33. Wellcome Trust [103830/Z/14/Z] Funding Source: researchfish
  34. Worldwide Cancer Research [14-1328] Funding Source: researchfish
  35. The Brain Tumour Charity [16/193] Funding Source: researchfish
  36. National Centre for the Replacement [NC/L000199/1] Funding Source: researchfish

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